K09026

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09026

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09026

Determination of introduced cDNA(s)

  • J013101C03 - Rice Full-length cDNAs - Original: J013101C03

    full reading [+] show sequence

    Nucleotide sequence: J013101C03 - full reading 
    GCCCCCTCTT TTCTTCCCCC CTCTCTCTCC CCCCAGCATC GTACCAAACC 
    ACACAACCGC AGCGACGGCA ACACGAAGCT CTCCTCTCCG GCGAGAATAG 
    CCAAGAACGC GACGCGACCA CACCCAAGAG GCCGAACAGA TCGAGCTCAA 
    GAAGGTTTTA GCCCATGGGG ATGGATTACT ACAAGATCCT GGGCGTCGAC 
    AAGGCCGCCA GCGACGACGA CCTCAAGAAG GCGTACCGCA AGCTCGCCAT 
    GAAGTGGCAC CCTGACAAGA ACCCCAACAA CAAGAAGGAG GCGGAGAACA 
    AGTTCAAGCA GATCTCCGAG GCGTACGAGG TGCTGAGCGA CCCGCAGAAG 
    CGAGCGGTGT ACGACCAGTA CGGCGAGGAG GGGCTCAAGG GGCAGGTCCC 
    GCCGCCGGGC GCCGGCGGGG CCGGCCCGGG AGGCGCGACG TTCTTCTCCA 
    CCGGCGGCGA CGGGCCCAAC GTGTTCCGGT TCAACCCGCG CAACGCGGAG 
    GACATCTTCG CGGAGTTCTT CGGCTCGTCC AGCCCGTTCG GCGGCATGGG 
    CGGTGGCATG GGCGGCGGCA TGGGGGGAGG GCCCGGGATG CGGACAGGCG 
    GCACGCGGTT CTCGTCGTCG ATCTTCGGGG ACGACATCTT CGGCTCGGCG 
    TTCGGCGGCG GCGCCGACGG GCACCACGGG ATGCACGGCG GTGGCGCCGG 
    GAGGGCGTTG AAGGCGCCGG CGATCGAGAG GAAGCTGCCG TGCAGCCTGG 
    AGGAGCTCTA CAAAGGCACC ACCAAGAAGA TGAAGATTTC CAGGGAAATC 
    GCTGACGCCA GTGGGAAGAC AATTCCAGTG GAGGAGATCC TGACCATCGA 
    TGTGAAGCCT GGGTGGAAGA AGGGCACCAA GATCACCTTC CCGGAGAAAG 
    GAAACGAGCA GCCGAACGTG ATCCCGGCCG ACCTCGTCTT CATCATCGAC 
    GAGAAGCCGC ACCCGGTGTT CACCCGTGAC GGCAACGACC TCGTCGTGAC 
    GCAGAAGATA CCGCTCGCCG AGGCCCTGAC CGGCCACACC GTCCACCTGA 
    CTACGCTCGA CGGCCGCAGC CTGACGATCC CGATCACCTC CGTCATCAAC 
    CCGGGCTACG AGGAGGTCGT CCGCGGCGAG GGCATGCCCA TCCCCAAGGA 
    CCCCTCCAAG AAGGGCAATC TCAGGGTCAA GTTCGACATC AAGTTCCCGG 
    CGAGGCTCAC CGCCGACCAG AAGTCCGGCG TCAAGCGGCT GCTGGGGCAG 
    TAGATCGAGC AACTGCACCG ATGTAGTATC AAAGCCTTTT CTTGTGTTGG 
    TGGTGTTGAA CTGGTGATCA TCCGGCAGCC GCGACGAATT TCTCGTTGAG 
    AGCTTTTTCA GGTCATGTGA CACGATGCAA AAAGGCAATG CGGCCTTAGA 
    TGTGTGAGAT ACTGATGAGA ACTAGTAGAA ACGTTATACA CAGCTTTTGT 
    GGTGC

    Gene models with high sequence identity

    1. AT2G20560.1 [+] show detail - DNAJ heat shock family protein
      E-value: 3e-109; Score: 392.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Heat shock protein DnaJ, N-terminal 26.047
    HMMSmart Heat shock protein DnaJ, N-terminal 1.2e-33
    HMMPfam Chaperone DnaJ, C-terminal 5.9e-30
    HMMPfam Heat shock protein DnaJ, N-terminal 6.6e-30
    HMMPanther HSP40-RELATED 4.9e-177
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 4.9e-177
    Gene3D Heat shock protein DnaJ, N-terminal 1.3e-28
    Gene3D no description 1.9e-25
    Gene3D no description 5.3e-26
    FPrintScan Heat shock protein DnaJ 0.000000000000022
    FPrintScan Heat shock protein DnaJ 0.000000000000022
    FPrintScan Heat shock protein DnaJ 0.000000000000022
    PatternScan Heat shock protein DnaJ, conserved site 0
    superfamily Heat shock protein DnaJ, N-terminal 1.7e-34
    superfamily HSP40/DnaJ peptide-binding 1.7e-23
    superfamily HSP40/DnaJ peptide-binding 2.9e-17

    See the detailed result >

    AT2G20560.1

    Model type
    Protein coding
    Short Description
    DNAJ heat shock family protein
    Computational Description
    DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR