K09050

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09050

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
whole plant flowering stage (PO:0007016)
  • premature (PATO:0000694)
    (Adult plant::Flowering::early)
flower (PO:0009046)
  • abnormal (PATO:0000460)
    (Flower::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09050

Determination of introduced cDNA(s)

  • J023057B01 - Rice Full-length cDNAs - Original: J023057B01

    full reading [+] show sequence

    Nucleotide sequence: J023057B01 - full reading 
    GGCAAAAGTT GAGGTAATGG ATCGATCAGA GATGGGGAGG GGAAGGGTTG 
    AGCTGAAGCG CATCGAGAAC AAGATCAACC GGCAGGTCAC CTTCTCCAAG 
    CGCCGCAACG GCCTCCTCAA GAAGGCGTAC GAGCTCTCCG TGCTCTGCGA 
    CGCGGAGGTG GCGCTCATCA TCTTCTCCAG CCGTGGCAAG CTGTACGAAT 
    TCGGTAGCGC CGGAATAAAC AAGACATTGG AAAAGTACAA TAGTTGCTGT 
    TACAACGCTC AAGGTTCAAA TAGTGCTCTT GCTGGTGGTG AACATCAGAG 
    CTGGTACCAA GAGATGTCAA GGCTCAAGAC TAAGCTTGAA TGTCTCCAAC 
    GCTCTCAGAG GCACATGCTT GGTGAAGATC TTGGACCATT GAGCATAAAG 
    GAACTGCAGC AGCTGGAGAA GCAACTTGAG TACTCACTGT CACAGGCTCG 
    ACAACGAAAG ACACAAATCA TGATGGAGCA GGTCGACGAT CTTCGCCGGA 
    AGGAACGCCA GCTTGGAGAG CTCAATAAGC AACTGAAAAA CAAGCTAGAA 
    GCTGAAGCCG ATAGCAGCAA CTGCAGATCA GCCATCCAGG ATTCCTGGGT 
    CCATGGCACC GTCGTCAGTG GCGGCAGAGT GCTGAATGCT CAACCACCAC 
    CAGATATTGA CTGTGAGCCT ACTCTGCAAA TTGGGTACTA TCAATTTGTC 
    CGTCCTGAGG CGGCCAATCC AAGAAGCAAT GGAGGAGGAG GGGATCAGAA 
    CAACAACTTT GTGATGGGAT GGCCCCTCTG AAGTCCAAGC TTGCTAATAA 
    AAACGCTGGC GTGCTATAAT ATATAGTTCG GCAAATGTTG AAACACATGT 
    GTTCTCAGTA TGTATATTTC TCCCCTATCC GGTGGTACTC TTAGCACGTA 
    CCTATGAGTG TATGTTTGTA CGTTATCTAT ACTCTATGCT AGGCAACCCT 
    ATACTATTAT GGT

    Gene models with high sequence identity

    1. AT2G45650.1 [+] show detail - AGAMOUS-like 6
      E-value: 2e-70; Score: 262.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Transcription factor, MADS-box 7.9e-33
    FPrintScan Transcription factor, MADS-box 7.9e-33
    FPrintScan Transcription factor, MADS-box 7.9e-33
    Coil coiled-coil 0
    Coil coiled-coil 0
    HMMPanther MADS BOX PROTEIN 1e-87
    HMMPanther MADS BOX PROTEIN 1e-87
    PatternScan Transcription factor, MADS-box 0
    ProfileScan Transcription factor, MADS-box 33.571
    ProfileScan Transcription factor, K-box 17.613
    HMMPfam Transcription factor, K-box 5.2e-30
    HMMPfam Transcription factor, MADS-box 2.3e-29
    HMMSmart Transcription factor, MADS-box 1.8e-41
    superfamily Transcription factor, MADS-box 3.7e-31

    See the detailed result >

    AT2G45650.1

    Model type
    Protein coding
    Short Description
    AGAMOUS-like 6
    Curator Summary
    sequence suggests this encodes a MADS-box transcription factor
    Computational Description
    AGAMOUS-like 6 (AGL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development; LOCATED IN: nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13 (TAIR:AT3G61120.1); Has 7294 Blast hits to 7293 proteins in 914 species: Archae - 0; Bacteria - 0; Metazoa - 630; Fungi - 307; Plants - 6281; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR