K09109

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09109

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09109

Determination of introduced cDNA(s)

  • J023038A05 - Rice Full-length cDNAs - Original: J023038A05

    full reading [+] show sequence

    Nucleotide sequence: J023038A05 - full reading 
    GAACGTGCAC ACACCACCAC CACCTTCATC TCGGTGGCTT CGTTCACTCC 
    GCCTACCTAC CTACCTTTGC AGTTGGTTTG CTGAACCCTC CTCAAGAACC 
    CACGCGCCTC TCGCGGCAGC AGCTAACCAA GCCATGGCGC GCAAGAAGAT 
    CCGGGAGTAC GACTCCAAGC GCCTCCTCAA GGAGCACCTC AAGCGCCTCG 
    CCGGTATCGA CCTCCAGATC CTCTCCGCCC AGGTTACACA ATCGACGGAC 
    TTCACAGAGC TGGTAAACCA GCAGCCATGG CTGTCAACCA TGAAGTTGGT 
    CGTGAAGCCC GACATGCTGT TCGGGAAGCG TGGCAAGAGC GGACTTGTGG 
    CCCTCAACCT AGATATTGCT CAAGTCAAGG AGTTTGTGAA GGAGAGGCTG 
    GGAGTTGAGG TCGAGATGGG TGGCTGCAAG GCTCCAATCA CCACCTTCAT 
    TGTGGAGCCA TTTGTACCCC ATGATCAAGA ATACTACCTT TCTATTGTCT 
    CGGAGAGGCT GGGCAGCACC ATTAGCTTCT CGGAATGTGG AGGAATAGAA 
    ATTGAGGAGA ACTGGGACAA GGTTAAGACA ATTTTTCTTC CCACTGAGAA 
    GCCAATGACA CCTGATGCAT GTGCTCCCTT GATTGCTACC CTTCCATTGG 
    AGGCACGTGG AAAAATTGGT GATTTCATTA AAGGAGTCTT TGCTGTTTTC 
    CAAGACTTAG ATTTCTCATT TCTCGAGATG AACCCATTTA CCATCGTGAA 
    TGGAGAGCCG TATCCTCTGG ACATGAGAGG AGAATTAGAT GACACAGCAG 
    CTTTCAAAAA CTTCAAGAAG TGGGGAAATA TCGAATTCCC ACTACCATTC 
    GGTAGAGTTC TCAGTTCTAC AGAAGGCTTT ATCCATGACT TGGATGAGAA 
    GACAAGTGCA TCTCTGAAGT TCACCGTTTT GAACCCAAAG GGGCGCATCT 
    GGACAATGGT TGCTGGAGGT GGTGCCAGTG TCATATATGC TGATACAGTC 
    GGAGATTTGG GATATGCTTC AGAATTAGGA AACTATGCAG AGTATAGCGG 
    TGCTCCCAAT GAGGAGGAGG TTCTGCAGTA TGCTAGAGTA GTACTTGATT 
    GTGCGACTGC TGATCCTGAT GGCCGCAAGA GAGCTCTTCT CATTGGAGGG 
    GGTATAGCTA ACTTCACCGA CGTCGGGGCC ACATTTAGCG GCATCATTCG 
    GGCCTTAAGA GAGAAGGAAT CCAAGTTGAA GGCTGCAAGG ATGCACATCT 
    ATGTCCGACG TGGTGGTCCA AATTACCAAA CTGGGCTGGC TAAAATGCGC 
    AAGCTTGGCG CAGAACTCGG CGTCCCGATT GAGGTGTATG GGCCAGAAGC 
    GACGATGGCT GGAATCTGCA AGCAAGCAAT TGAATGCGTT ATGGCCGCAG 
    CATAAATGAA GATGCAAGTT CTGGGATCTG CAGGCAAGAT GCTGAATGCG 
    TGATGGGTGC GACATGGATG AGAGTGTGGT GTAGTTGCAG TAGTTCTCTG 
    CAGATGGCTG ATTTGTTTCT TGATACATGT TATACTTGGA CGAGATCTGG 
    ATAGGTTATT GATGTACTGA AACTACTACT GCGATGCAAT AAAAGTGAGA 
    GTAGCGTTTC CTGATT

    Gene models with high sequence identity

    1. AT1G09430.1 [+] show detail - ATP-citrate lyase A-3
      E-value: 0; Score: 748.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D ATP-grasp fold, subdomain 2 2.4e-18
    HMMPfam ATP-grasp fold, succinyl-CoA synthetase-type 3.3e-18
    superfamily Glutathione synthetase ATP-binding domain-lik 4.1e-36
    superfamily Succinyl-CoA synthetase-like 1.8e-19
    HMMPanther ATP-CITRATE SYNTHASE 2.2e-165

    See the detailed result >

    AT1G09430.1

    Model type
    Protein coding
    Short Description
    ATP-citrate lyase A-3
    Curator Summary
    Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity.
    Computational Description
    ATP-citrate lyase A-3 (ACLA-3); CONTAINS InterPro DOMAIN/s: ATP-grasp fold, subdomain 2 (InterPro:IPR013816), ATP-grasp fold, succinyl-CoA synthetase-type (InterPro:IPR013650), Succinyl-CoA synthetase-like (InterPro:IPR016102); BEST Arabidopsis thaliana protein match is: ATP-citrate lyase A-1 (TAIR:AT1G10670.4); Has 5303 Blast hits to 5302 proteins in 1635 species: Archae - 133; Bacteria - 3235; Metazoa - 230; Fungi - 139; Plants - 96; Viruses - 0; Other Eukaryotes - 1470 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR