K09113

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09113

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09113

Determination of introduced cDNA(s)

  • J013000F07 - Rice Full-length cDNAs - Original: J013000F07

    full reading [+] show sequence

    Nucleotide sequence: J013000F07 - full reading 
    GAGATCCTCC ATCCCGCGGC GGCCGTGAGC ACCAACACTC ACGCATTCCT 
    TCCTACTCCG CGAGATCTCC GGATTCGTTT CGGTGTTTTG CGAGTCGCGC 
    CCGGAGAAGA GGAGAGGAAA TCCGGTCAAT CGCGGCGTCG GCGTGCCGTC 
    GCTTGGGGTG GTGTTGGTGG TTCTGAATTT TGATTGCTTC GTGCTTTTCG 
    TTTGGGGGAG GGCAGTGGTC GCCATGGGAT TGGGGAACGA GGCGAGCTCG 
    TCGTCGTCGC GGCTGCTGGA TCCGGCGCCT CTGCTGCCGC ACCACGGTGG 
    AGATGGCGCC GGGAAGCTGT CGTCGCAGCC CAAGACCTTC GCGAACGTCT 
    TCATCGCGGT GGTCGGCGCC GGCGTGCTGG GGCTGCCGTA CACGTTCTCG 
    CGGACCGGGT GGGCGGCGGG GTCCATCCTC CTGCTCTCCG TCGCGGCGCT 
    CACCTTCTAC TGCATGATGC TGCTCGTCGC CTGCCGCCGC CGCCTCGCCG 
    ACGAGCACCC GAAGATCGCC TCCTTTGGGG ACTTGGGGGA CGCCGTGTTC 
    CGCGGTCCGG GGCGCCTCGC CGTGGACACC ATGCTGGTGC TCAGCCAGGC 
    CAGCTTCTGC GTCGGGTACC TCATCTTCAT CTCGAACACC ATGGCGCACC 
    TTTACCCCGT CTTCGCGCCC TCCTCCAACG CGCTCCTCTC CCCAAAGGCG 
    CTCTCATCTG GGCCATGCTG CCGTTCCAGC TCGGGCTCAA CTCCATCAAG 
    ACGCTGACGC TCCTCGCGCC GCTCAGCATC TTCGCCGATG TGGTTGACCT 
    CGGCGCCATG GGCGTCGTTC TCGGGGAGGA CGTGTCCGTC TGGCTCGCCA 
    AACCACCACC CGTCTTCGCC TTCGGCGGCC TGAGCGCGAT CCTGTACGGC 
    ATCGGCGTGT CCGTGTACGC CTTCGAGGGA ATCGGCATGG TCCTTCCGCT 
    TGAGGCGGAG GCCGCCAACA AGAAGAAGTT CGGGACCACG CTCGGGCTAT 
    CCATGGGGTT CATCGCCGTC ATGTACGGCC TGTTCGGCGC CATGGGGTAC 
    ATCGCTTTCG GCGACGCCAC GCGCGACATC ATCACCACCA ACCTCGGGAC 
    CGGGTGGCTC TCGGCCGCCG TGCAGCTCGG GCTGTGCATC AACCTCTTCT 
    TCACCATGCC GGTGATGATG CACCCCGTGT ACGAGGTCGC CGAGCGGCTG 
    CTCCACGGCA AACGCTACTG CTGGTGGCTG CGGTGGCTGC TCGTCCTGGC 
    CGTCGGCCTC TCGGCCATGT ACGTGCCCAA CTTCACCGAC TTCCTGGCGC 
    TCGTCGGGAG CAGCGTCTGC GTCCTGCTCG GCTTCGTGCT GCCGGCCTCG 
    TTCCACCTCA AGGTGTTCGG CGCCGAGATG TCCTGGTCCG GGGTGCCCAG 
    TGACGTCCTG CTCGTCCTGC TCGGCCTCTC GCTCGCCGTC TTCGGCACCT 
    ACACGTCCCT GCTGCAGATC TTCCATTCCT CCAGCGCTTA ATCTCTGGAG 
    AATCTTTACG GATAGCTGCG CCGATGATTG ATTTGCTCAT TTGCTTCGCG 
    CGCGGGTGTC AGCCTGTCAG GTACGCTGGT TGCATTCTTC GTGTACAGAG 
    AAGGTGATCG GTCGATCAGA GGGGCAATGC CCAATTCAGC TTGCTGTTGA 
    TTTGGGCATG GACAGCGTGC ATCGGCCGCA TTCTTTCGAT TACAAGTCAG 
    ATGGTTTGTA CAAGTTAGCG TGGATGGCAT GGAGAAATCT GTATGGTTTT 
    GCAACGACAG ATTCCCATAG CTACTCGTGT CAGTTAATAT TTATGTGTAT 
    GTCTTGGATG TTTCAGCTGC TGCATTGCAC GGTGGAATCG ATGAAAGGAC 
    ATAGTAAGTT TCAGTCTAAG TTTAAGCCTA TTTAGTTGAT AAATAAAGTG 
    TCTAGTTGAG GTTGCAGCTT GTGTGCGGTA CTGCGGGTTG TGTCAATTAG 
    GAAGGCAAGC AATCGGGACG ACTTGGCAAA GTAT

    Gene models with high sequence identity

    1. AT4G38250.1 [+] show detail - Transmembrane amino acid transporter family protein
      E-value: 5e-122; Score: 154.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther AMINO ACID TRANSPORTER 3.2e-49
    HMMPanther AMINO ACID TRANSPORTER 7.4e-32
    HMMPfam Amino acid transporter, transmembrane 2.5e-38
    HMMPfam Amino acid transporter, transmembrane 8.6e-28

    See the detailed result >

    AT4G38250.1

    Model type
    Protein coding
    Short Description
    Transmembrane amino acid transporter family protein
    Computational Description
    Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G42005.1); Has 5006 Blast hits to 4918 proteins in 286 species: Archae - 16; Bacteria - 54; Metazoa - 1812; Fungi - 943; Plants - 1365; Viruses - 6; Other Eukaryotes - 810 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR