K09137

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	increased height (PATO:0000570) (Adult plant::Plant height::tall)
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09137

Determination of introduced cDNA(s)

J013063M10 - Rice Full-length cDNAs - Original: J013063M10

full reading [+] show sequence

GATTGAACGC ACGCTACACT GCAAGAAAGG CAAGTATAGG GGTGGCAGGT 
AGTTTATATT CACTGGAAAC CGAGAACTTC ACTCCTCCCA GCACTCCACA 
CTAGGAGGAT GCTCACTGTC TGAATGACTG ACTGGCTGCT GCTGCTGCTC 
ATTCCTTCTC CTACTCTGCC TGCCTCCTCT GCTGTGTCCT TGGGAGAATT 
CTTCAGGGAC AGTATCCCTG CAGAGGTGAG ATCATGGGAC AGTCGAAGAA 
GAAGTTCCGC GGAGTCAGGC AGCGCCACTG GGGCTCCTGG GTCTCCGAGA 
TCAGGCACCC TCTCCTTAAG AGGAGGGTGT GGCTGGGTAC CTTTGAGACG 
GCGGAGGAGG CGGCGCGGGC GTACGACGAG GCCGCCATCC TGATGAGCGG 
CCGCAACGCC AAGACCAACT TCCCAGTCGC GAGGAACGCC ACGGGGGAGC 
TCACACCGGC GGCTGCGGTG GCAGGGCGGG ATGGCCGTGT CGGCGGCGGC 
AGCGGCAGCT CGTCCTCAAT GACGGCCAAC GGCGGCGGGA ACAGCCTGAC 
TCCAGCTGGG TCATGACCGT CGAGCTCAAC AAGGACACGG CCGTGTCGTC 
GGCTGCGACG GTGGCAGCAG CAACAGCAGT GTCGTCCAGC GACCAGCCGA 
CTCCGAGTGA CAGCACAGTC ACAACGACGT CCACGTCCAC CACGGGCTCG 
CCGTCGCCAC CACCTCCGGC AATGGACGAC GAGGAGAGGA TCGCGCTGCA 
GATGATCGAG GAGCTGCTGG GCAGGAGCGG CCCGGGCTCG CCGTCACATG 
GGCTGCTGCA CGGTGGTGAA GGTAGCCTCG TCATCTGAAT TCCGGAAGAA 
CAGGAAAGAA ATTGAAAATG CAAGGTTAAA ACAGCATGAT CAGGTCACCA 
TCTAAGATCA AGGATCTGGT AGGGTGGTTG GTGCACAGGC AGTTAAGATT 
GCTACATATG ATAGGTATAT CTCTATTACT ACTACATATC CAGCTTAATT 
AGGAAACAAT TATAAGATCG ATTACTACTG TGTGAAGTGA AGCTGTGTAT 
TTATTAAAGA CTTACTTGTA TGTACAAGAC GTCCCCGTCA TTATAGTCAT 
ACTGGTGAAA GCTCTGCTAT GTATCAACGT CATCAGAGAT CAGACTACAT 
ATATATAAGT GGTGTCAACT TCTAATAAAA GTAAATAAAA ACATTGTAAT 
TGTGT

Gene models with high sequence identity

AT1G15360.1 [+] show detail - Integrase-type DNA-binding superfamily protein
E-value: 2e-21; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	3.5e-39
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.5e-22
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	0.000000000073
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	0.000000000073
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	21.957
superfamily	DNA-binding, integrase-type	5.2e-22
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	8.7e-17

See the detailed result >

AT1G15360.1

Model type: Protein coding
Short Description: Integrase-type DNA-binding superfamily protein
Curator Summary: Encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. This gene is involved in wax biosynthesis. Over-expression of the gene results in glossy leaf phenotype and increased drought tolerance. Two closely related genes, AT5G25390 and AT5G11190 have similar phenotypes when over-expressed. Strong expression levels in flowers. Binds to the promoter of LACS2.
Computational Description: SHINE 1 (SHN1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G25390.2); Has 5918 Blast hits to 5765 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 9; Fungi - 23; Plants - 5843; Viruses - 2; Other Eukaryotes - 35 (source: NCBI BLink).
Link: InterPro Scan - TAIR