K09215

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09215

Determination of introduced cDNA(s)

  • J013099D13 - Rice Full-length cDNAs - Original: J013099D13

    full reading [+] show sequence

    Nucleotide sequence: J013099D13 - full reading 
    GAGCTCACAC ACAACCTCTT CAATACTCTC ACTGCAATTT CTGGAGCTCA 
    CACTGCATGC GCCGGCCAAT AATGGCGACG ACGACGGCGA GGTTGCTCCT 
    CCTGCTCACG GTGGCGGGCT TCTGCCTCTG CCACACCACC TGCCAGGAGG 
    CGGCGCCGCC GCCGCCGCCG TACTGCGGCA GCCTGAGGAC GGCCGTGGAG 
    GCGCGGAACA TCATCGGGTG GAAGACGGTG CCGCCGCCGT GCGCCAAGTA 
    CGTCGCCGAC TACATCACCG GCGAGCGGTA CGGCCGCGAC GCCGACGTGG 
    TGATCAACGA GGCCATCGCC TACGCCGAGA GCCTCAAGCT CTCCGGCACC 
    GGCAAGGAGA TCTGGGTGTT CGACGTCGAC GACACCGCCC TCTCCACCGT 
    GCCCTACCAA GCCAACCATG GCTACGGAGT TCAACCGTTC GACAACCAGA 
    GCTTCCTCAA GTACGTGGTG CAGGGAAGCG CGCCAGCACT GCAGAGTACA 
    CTGCGGCTTT ACCGACGGTT ACTCCAGCTT GGTATAAAGC CGGTGTTCCT 
    GACAGACCGC ACCGAGGACC AGAGGACGGT CACAACCAAC AACCTTATTA 
    AGCAGGGCTA CTGCAATTGG GAGAAGCTTG TGCTGCAGCC GGTTAGGCTT 
    CAGACCTCGA CGTTGGCGTT CAAGACCTGC GAACGACAGA AGCTGGTGAA 
    TGATGGCTAC ATCATCGTCG GCAACATTGG CGACCAGTGG AACGACATCC 
    GCCGCTCGCC GGATGGTTGC CGCACCTTTA AGTTCCCCAA CCCCATGTAC 
    TATGTCGACT AGCTAGCTAG CTATCCATGG ATATATACCT TGTTTGTGTC 
    TGTTTCATCT ACTCGTTTTT TGTCATGAAT TTGCATCTAG TAATTAATCT 
    TTGACGCGTG CATATGTTTG ATATGTTTGT TAATTTTTCG TGAGATGAAA 
    ATTGAATTTG TAATAACGCT TGTTTGGCAG TTGGCCATTG ATTGGTCAAT 
    GTACTGTGTT GAGCAAGCTT GTTGTATTTT TACAGAATTA ATAATGGAAC 
    TGATGGGCC

    Gene models with high sequence identity

    1. AT5G51260.1 [+] show detail - HAD superfamily, subfamily IIIB acid phosphatase
      E-value: 4e-52; Score: 202.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Acid phosphatase (Class B) 1.4e-59
    superfamily HAD-like 0.0000000048
    HMMPIR Vegetative storage protein/acid phosphatase 4.1e-115

    See the detailed result >

    AT5G51260.1

    Model type
    Protein coding
    Short Description
    HAD superfamily, subfamily IIIB acid phosphatase
    Computational Description
    HAD superfamily, subfamily IIIB acid phosphatase ; FUNCTIONS IN: acid phosphatase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Acid phosphatase (Class B) (InterPro:IPR005519), Vegetative storage protein/acid phosphatase (InterPro:IPR014403), Acid phosphatase, plant (InterPro:IPR010028); BEST Arabidopsis thaliana protein match is: HAD superfamily, subfamily IIIB acid phosphatase (TAIR:AT4G25150.1); Has 906 Blast hits to 901 proteins in 278 species: Archae - 0; Bacteria - 491; Metazoa - 2; Fungi - 0; Plants - 366; Viruses - 0; Other Eukaryotes - 47 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR