K09218

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09218

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09218

Determination of introduced cDNA(s)

  • J033071J10 - Rice Full-length cDNAs - Original: J033071J10

    full reading [+] show sequence

    Nucleotide sequence: J033071J10 - full reading 
    GTCCTCTCTC CTTCCCCCTC GTTCTCCGCT TCCACCCAAA CCAAACCCAA 
    ACCCAACTTG CGAAACCCCA ACGAATCCCC CCCAAAACAC CCACCCAGTC 
    AAACACTCCC CAACTCCGAT CCCCACCCCC ATGGCGTCGG AGATCGAGGT 
    GCTCGAGGAC ACCACCACCA CGATGGCCGC CTCCGCCGCC CCCGTGGCGC 
    CCGCGTCCCC ATCCCCATCC CCCGCCGCCG CTGCCGACGG CGAGGAGGGG 
    GAGGGGCCGG CCCCTGCGGC GGAGGACGAC TCGCTGAAGA ACGACGTGTA 
    CACGGCGGCG GCGTACGGCG ATCTGGAGAA GCTGCAGCGG CTAGTGGAGG 
    GGGAGGGCCA CCCGGTCACG GAGCCCGACG GCCTCGGCTA CCACGCGCTC 
    CAGTGGGCCG CCCTCAACAA CCGCGTCGCC GCCGCGCAGT ACATCCTCGA 
    GCATGGAGCA GATGTAAATG CTGTGGACCA CACTGGGCAA ACAGCACTTC 
    ACTGGAGTGC TGTACGTGGA CACATCCAAG TTGCTGAGCT TCTTCTGAAA 
    GAAGGAGCTA AGGTGGATGT TGCTGATTTA TACGGTTATC AGGCAACACA 
    TGTTGCAGCG CAGTATGGCC AGACAGCATT TATTTATCAT ATTGTTGCGA 
    AGTGGGATGC TGATCCAGAT GTCCCTGATA ATGATGGAAG AAGCCCACTG 
    CACTGGGCTG CTTACAAGGG ATTTGCGGAT TCTATACGTC TCCTTTTGTA 
    TTTGGATGCT TATAGGGGGC GGCAGGATAA AGAAGGTTGT ACCCCTTTAC 
    ATTGGGCTGC TATTAGGGGG AACCTGGAGG CATGCACTGT GCTAGTTCAG 
    GCTGGCAAAA AGGATGACTT GATGGTGAAG GATAAGACTG GTCTAACTCC 
    AGCACAGCTT GCTGCTGATA AGAGTCATCG GCAAGTTGCA TTTTTTCTTG 
    ACAATGCTAA AAGGGTATAT GATAGAGGAT GTGATGGGAA TACCAATTTT 
    GGAAAGCTAT CGAAACTGGG GCTAGCTCCT GTACTTTGGT GTATTATTGT 
    TGGCTTGCTT GCTACATATA TACACTCTGT TATATCAGGT CAATATATCA 
    TGGATATGAC AGCACCATTT GGGCTGTTTG CATGGTCAGG AGTTTTCCTT 
    GCAACTGCTG GCCTAGTCAT GTTCTATAAA TGTAGCAGGA AAGATCCTGG 
    CTACATCAAA GCAAATATAC GAGATTCACA AAATCAAAGG GATGATGAAC 
    CTTTGTTGAA GTTGGAGTTA GACAATCCCG CACTTCTGTC TGGTAACTGG 
    TCACAGCTTT GTATAACATG CAAAATTGTG AGACCTGTTC GTTCGAAGCA 
    TTGTTCTACA TGTGATCGCT GTGTTGAGCA GTTTGACCAT CACTGTCCTT 
    GGGTATCTAA TTGCATTGGC AAGAAGAACA AATGGGAATT CTTCATGTTC 
    ATCACTCTAG AAGTTTTTGC AATGATCATT ACTGGTTCTG CTGCCATTAT 
    AAGGATGGTA AGAGATCCGG CTTCTCCAGC ATCCTTTATT CCTTGGCTCA 
    GCTATTCTGC TTTTAACCAT ACTGGGGCAC TTTCCCTTTT CATAATGGAC 
    CTCTTCCTTT TCTTCGGTGT TGCAGTTCTA GCAGTAGTCC AGGCATCTCA 
    GATAGCGAAG AACATTACAA CAAACGAGAT GGCAAATTCC ATGAGATACA 
    GTTATCTAAG AGGTCCAGGT GGAAGATTCA GAAACCCATT TGACCATGGA 
    GCGCGCAAGA ACTGCTCAGA ATTCTTGTTA AATGGATACA ATGAGGACAT 
    TGAACGTCTT GATCATACGT CACACACTGA TGAGGAAATG GGAATGATAC 
    AGATGACAAA CGCAGTCTCT CAGAATGGCG AGGGCCCTTC CCACCATGGT 
    AACGGCACTG GCCATTCTTG TGCTGAATCA CATGCTCACT CAAAATCTCA 
    CAGTCAAGTA AGTTCATCTC AGTGTTGTGA CCACAGTAAG AAGACCGATA 
    GAACACCATT GGGCCTAGGG CTGGGCCTTG GACGAAACAG TGCTTCCCGG 
    CAGTATGTCC GGTCTCTTCT CCCATTGTGA TTTGTTATAT GCAGATCATG 
    TGTGTGCTCT CTGTAGATTG TATGTGTTCA TGCTGAGGCT CCATTATTTA 
    TTTAGCTGCT TGTGACATAC CACATAGGTT TCGCTAGCTT ACGTTAATAT 
    TGTTGGGGTG CTAGCTGTGT GAAAATTCAG ATCTATTAGA TCCAGTATTT 
    TTTGTGGTGA ATACATAGGA GATGAAGGTA GCAAGGTGCT CATGAATATC 
    CGCTGATCCG CAGTTCAGAA ATGTCTTGTC GCTCCTGAAA AGAGGGCAAC 
    AATTTTGTGC AGATGCAGCA GCATGAAACA TCTTCATTGC TGTGTCCCTT 
    GGTGTCAATA TAACTCCAGC ATTTTAGCTT CTGGATCTTA CATCTGTGGG 
    AAAATGTAGT TGTAAACTAA GATAATTGTA AATTTATTAG CAAATTCTGA 
    ATTTAGATAC TCTTGTTGTG ATCTATAGCT GTACTGACAG TCCAGAAAGT 
    TGTAATAACA AAACAAATAT C

    Gene models with high sequence identity

    1. AT5G20350.1 [+] show detail - Ankyrin repeat family protein with DHHC zinc finger domain
      E-value: 0; Score: 798.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ankyrin repeat 10.633
    ProfileScan Ankyrin repeat 13.517
    ProfileScan Ankyrin repeat 10.179
    ProfileScan Ankyrin repeat 9.965
    ProfileScan Zinc finger, DHHC-type 25.756
    ProfileScan Ankyrin repeat-containing domain 50.772
    HMMPanther gb def: Hypothetical protein At2g14250 3e-50
    HMMPanther ANKYRIN REPEAT-CONTAINING 3e-50
    superfamily Ankyrin repeat-containing domain 4.4e-60
    HMMSmart Ankyrin repeat 0.0034
    HMMSmart Ankyrin repeat 5.9e-05
    HMMSmart Ankyrin repeat 2700
    HMMSmart Ankyrin repeat 0.17
    HMMSmart Ankyrin repeat 0.0044
    HMMSmart Ankyrin repeat 3400
    Gene3D Ankyrin repeat-containing domain 1.2e-51
    HMMPfam Ankyrin repeat 1.6e-05
    HMMPfam Ankyrin repeat 9.4e-07
    HMMPfam Ankyrin repeat 0.00018
    HMMPfam Ankyrin repeat 3.8e-06
    HMMPfam Zinc finger, DHHC-type 1.5e-21

    See the detailed result >

    AT5G20350.1

    Model type
    Protein coding
    Short Description
    Ankyrin repeat family protein with DHHC zinc finger domain
    Curator Summary
    Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth.
    Computational Description
    TIP GROWTH DEFECTIVE 1 (TIP1); FUNCTIONS IN: acyl binding, S-acyltransferase activity; INVOLVED IN: response to salt stress, cell tip growth; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein with DHHC zinc finger domain (TAIR:AT2G14255.1); Has 74376 Blast hits to 32836 proteins in 1312 species: Archae - 100; Bacteria - 6632; Metazoa - 35576; Fungi - 7192; Plants - 4422; Viruses - 788; Other Eukaryotes - 19666 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR