K09220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09220

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09220

Determination of introduced cDNA(s)

J023134E03 - Rice Full-length cDNAs - Original: J023134E03

full reading [+] show sequence

GGTCCGTACC CAAAATTGCC AAAATCACCC TCCAATTCCT TTCCCCTCCT 
CCCTCCCCTC TGCCGCCATG GCCGCCTCCT CCTCCTCCTC CCCCCTTGAC 
CCACACCACC AATCGCCCCA AATCCATGAG ACTCCCCGCG CCACAATCCA 
GCCCTGCCGC ACGAGGATGT CCCAGTCCGA CGTTGTCTAC AGCTGCGGAT 
CTTGTGGATA CCCTCTGAAC CTTTCATCTT CTAACCGAAG CACATCTGAC 
GTAGGATCCT CATACCAAAA GTCTGTGAAG AAAGGTCTGA TTTCATTCAT 
TACTGTTGAT CTGAGCCGAT TTACTCAGGT AGACGAGATA TCTTGCTTTC 
CCCTCACCTG GCGTAGCTAT CGGCCAAAAA CTAAGCTTCT CTGCCGAAAG 
TGTGGGGCAT CTATTGGCTA TGGGTATGGT GAACCAGCTG TTCTGTGCAG 
CTTTGATCCA GCCAGTTCAT CATCTAGTAC ATCCCAAAAG TATTTAATAA 
AAATCCAGGC TCTCCAGCCT TCGGATAGTA CTCAGTAGTC TGTCAACTTC 
AGCCAAAATT TGGAAAGAGA GGAAATGGAT GACAACGTGG AAAACTATAT 
CAATTTCCTA TCAGATGATT GCTTGATTTG TATATTTAAC AAGCTTGAAA 
GTGAATCGGA CAGGAATGCT TTTGGCTTAA CTTGTAAGAA TTGGTTTAAG 
GTTCGAAACA TTGCCCGGAA ATCAATAATT TTCCATTGTT CTTTTAACCC 
TAAAGTATAT AAGGAGCACG CCAATTGCCT TTCAAAGTTA TTGGCCCGCT 
CACCTTATCT TAACTTGGTC TCCCTCGCTG GGCTTACAGA ACTACCTGAC 
ACGGCTTTAA ATCAGCTGAG AATTTCTGGA GCATCATTGC AGTCCCTTTC 
TTTCTACTGC TGCTCTGGTA TTACGGATGA TGGTTTAGAG GTGGTCTCAA 
TCGGATGCCC TAATTTGGTG AGTCTTGAAC TCTACCGCTG CTTTAATATT 
ACAGATCATG GTTTGGAAAA TCTTTGCAAG GGCTGCCATG CTTTGAAGAG 
TCTTAACCTG GGTTACTGTG TAGCCATTTC AGATCAAGGG ATTGCTGCAA 
TCTTTAGGAA TTGCCCGAAT ATTTCCACAA TTATCATAGC ATATTGCAGA 
GGTTTATCCG GTGTTGGATT CAGAGGTTGT CCAGGTACAC TTTCTCATCT 
AGAAGCTGAG TCGTGCATGC TTTCTCCAGA TGGTTTGTTG GATGTAGTGA 
GTGGTGGTGG ACTGGAGTAT CTAAATTTGT ACAATTTGAA AAGCCCAACT 
GGACTTGATG GCCTGGACAG AGTTGGTTAT GCGAGAAGTC TTCGGTTTTT 
AAACCTCAGG ATGTGCCGTT ACCTTACCGA TGATTCTGTG ACGGCAATAG 
CTAGCGGGTG TCCATTGATT GAGGAATGGA GCCTCGCTGT CTGCCATGGA 
GTTCGCTTGC CTGGATGGTC TGCGATTGGA TTGCTCTGCA ACAAGCTGAG 
AATCTTGCAT GTTAACCGTT GCCGAAACAT TTGTGACCAA GGTTTGCAGG 
CTCTAGGGGA TGGCTGTGTA TGCCTTCAAG TTCTGCATAT CCATGGATGT 
GGCAAGATCA CTAATAATGG TCTGGCATCA TTTAGCATTG CTAGGCCCAA 
TGTGAAACAA AGGGCTGATG AAGTCATGTG CATTGGCCCC TCCATTGAGG 
ATTTATTCCG ATTGCAATGA TCAGAAACTC AGAAAGTTTC AGCTAAAGTT 
TGGGGTTGAC AAGATTCAAG CCATTGCCAC CAGCATTGTC ATTACAAGTC 
ACAAGATATT TGGTTCTGTA ACCATTATGC CCTTCTAATT TGCTCAAAAG 
TGCATACTTA TTTATTATAA ACAGGACCAC AAATATACAA ATGGATTGCG 
AGGAGTCAAG TCCATTTGTT CCTGTGGTTA TTTGCAAGTT CTGAGTTTAT 
TGGGTGATAC AGAAAATGGT TGTAGAAGGT TGTTTTTCGT ACAATTTGAT 
AGCTAGTTTA AACTTGTAAA TTGACATGTT TTAAAACCAT CGAAAATTGA 
ATTGGATGGG TTGGTTGTAC TACAGCGGTT GAACCGGTGT TTAAACTTTC 
CGATGGATTG TATTAGGTTA ACTCGAGAAG TTCAACTATC AGAATGCCAC 
CATAGCTGAA AACAATTTTT AAGTTTTGAT GAAATGTAAA CAAAGAAAAT 
CCTGAACTTG TTGACCAATC GAAGTTGTTG ACGAATGATT TAGCAAACG

Gene models with high sequence identity

AT3G07550.2 [+] show detail - RNI-like superfamily protein
E-value: 3e-88; Score: 323.00

InterPro Scan Digest

Program	Description	E-value
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	240
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	1
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	3.6e-07
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	2.7e-05
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	450
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	0.56
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	0.024
HMMSmart	Leucine-rich repeat, cysteine-containing subtype	57
HMMPanther	gb def: F21O3.26 protein (Hypothetical protei	6e-94
HMMPanther	F-BOX/LEUCINE RICH REPEAT PROTEIN	6e-94
Gene3D	no description	1.9e-31
Gene3D	no description	2.3e-22
superfamily	RNI-like	3.4e-36

See the detailed result >

AT3G07550.2

Model type: Protein coding
Short Description: RNI-like superfamily protein
Computational Description: RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G23340.1); Has 6516 Blast hits to 2862 proteins in 227 species: Archae - 0; Bacteria - 210; Metazoa - 2727; Fungi - 707; Plants - 2248; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).
Link: InterPro Scan - TAIR