K09220

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09220

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09220

Determination of introduced cDNA(s)

  • J023134E03 - Rice Full-length cDNAs - Original: J023134E03

    full reading [+] show sequence

    Nucleotide sequence: J023134E03 - full reading
    GGTCCGTACC CAAAATTGCC AAAATCACCC TCCAATTCCT TTCCCCTCCT 
    CCCTCCCCTC TGCCGCCATG GCCGCCTCCT CCTCCTCCTC CCCCCTTGAC
    CCACACCACC AATCGCCCCA AATCCATGAG ACTCCCCGCG CCACAATCCA
    GCCCTGCCGC ACGAGGATGT CCCAGTCCGA CGTTGTCTAC AGCTGCGGAT
    CTTGTGGATA CCCTCTGAAC CTTTCATCTT CTAACCGAAG CACATCTGAC
    GTAGGATCCT CATACCAAAA GTCTGTGAAG AAAGGTCTGA TTTCATTCAT
    TACTGTTGAT CTGAGCCGAT TTACTCAGGT AGACGAGATA TCTTGCTTTC
    CCCTCACCTG GCGTAGCTAT CGGCCAAAAA CTAAGCTTCT CTGCCGAAAG
    TGTGGGGCAT CTATTGGCTA TGGGTATGGT GAACCAGCTG TTCTGTGCAG
    CTTTGATCCA GCCAGTTCAT CATCTAGTAC ATCCCAAAAG TATTTAATAA
    AAATCCAGGC TCTCCAGCCT TCGGATAGTA CTCAGTAGTC TGTCAACTTC
    AGCCAAAATT TGGAAAGAGA GGAAATGGAT GACAACGTGG AAAACTATAT
    CAATTTCCTA TCAGATGATT GCTTGATTTG TATATTTAAC AAGCTTGAAA
    GTGAATCGGA CAGGAATGCT TTTGGCTTAA CTTGTAAGAA TTGGTTTAAG
    GTTCGAAACA TTGCCCGGAA ATCAATAATT TTCCATTGTT CTTTTAACCC
    TAAAGTATAT AAGGAGCACG CCAATTGCCT TTCAAAGTTA TTGGCCCGCT
    CACCTTATCT TAACTTGGTC TCCCTCGCTG GGCTTACAGA ACTACCTGAC
    ACGGCTTTAA ATCAGCTGAG AATTTCTGGA GCATCATTGC AGTCCCTTTC
    TTTCTACTGC TGCTCTGGTA TTACGGATGA TGGTTTAGAG GTGGTCTCAA
    TCGGATGCCC TAATTTGGTG AGTCTTGAAC TCTACCGCTG CTTTAATATT
    ACAGATCATG GTTTGGAAAA TCTTTGCAAG GGCTGCCATG CTTTGAAGAG
    TCTTAACCTG GGTTACTGTG TAGCCATTTC AGATCAAGGG ATTGCTGCAA
    TCTTTAGGAA TTGCCCGAAT ATTTCCACAA TTATCATAGC ATATTGCAGA
    GGTTTATCCG GTGTTGGATT CAGAGGTTGT CCAGGTACAC TTTCTCATCT
    AGAAGCTGAG TCGTGCATGC TTTCTCCAGA TGGTTTGTTG GATGTAGTGA
    GTGGTGGTGG ACTGGAGTAT CTAAATTTGT ACAATTTGAA AAGCCCAACT
    GGACTTGATG GCCTGGACAG AGTTGGTTAT GCGAGAAGTC TTCGGTTTTT
    AAACCTCAGG ATGTGCCGTT ACCTTACCGA TGATTCTGTG ACGGCAATAG
    CTAGCGGGTG TCCATTGATT GAGGAATGGA GCCTCGCTGT CTGCCATGGA
    GTTCGCTTGC CTGGATGGTC TGCGATTGGA TTGCTCTGCA ACAAGCTGAG
    AATCTTGCAT GTTAACCGTT GCCGAAACAT TTGTGACCAA GGTTTGCAGG
    CTCTAGGGGA TGGCTGTGTA TGCCTTCAAG TTCTGCATAT CCATGGATGT
    GGCAAGATCA CTAATAATGG TCTGGCATCA TTTAGCATTG CTAGGCCCAA
    TGTGAAACAA AGGGCTGATG AAGTCATGTG CATTGGCCCC TCCATTGAGG
    ATTTATTCCG ATTGCAATGA TCAGAAACTC AGAAAGTTTC AGCTAAAGTT
    TGGGGTTGAC AAGATTCAAG CCATTGCCAC CAGCATTGTC ATTACAAGTC
    ACAAGATATT TGGTTCTGTA ACCATTATGC CCTTCTAATT TGCTCAAAAG
    TGCATACTTA TTTATTATAA ACAGGACCAC AAATATACAA ATGGATTGCG
    AGGAGTCAAG TCCATTTGTT CCTGTGGTTA TTTGCAAGTT CTGAGTTTAT
    TGGGTGATAC AGAAAATGGT TGTAGAAGGT TGTTTTTCGT ACAATTTGAT
    AGCTAGTTTA AACTTGTAAA TTGACATGTT TTAAAACCAT CGAAAATTGA
    ATTGGATGGG TTGGTTGTAC TACAGCGGTT GAACCGGTGT TTAAACTTTC
    CGATGGATTG TATTAGGTTA ACTCGAGAAG TTCAACTATC AGAATGCCAC
    CATAGCTGAA AACAATTTTT AAGTTTTGAT GAAATGTAAA CAAAGAAAAT
    CCTGAACTTG TTGACCAATC GAAGTTGTTG ACGAATGATT TAGCAAACG

    Gene models with high sequence identity

    1. AT3G07550.2 [+] show detail - RNI-like superfamily protein
      E-value: 3e-88; Score: 323.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 240
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 1
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 3.6e-07
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 2.7e-05
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 450
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.56
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 0.024
    HMMSmart Leucine-rich repeat, cysteine-containing subtype 57
    HMMPanther gb def: F21O3.26 protein (Hypothetical protei 6e-94
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 6e-94
    Gene3D no description 1.9e-31
    Gene3D no description 2.3e-22
    superfamily RNI-like 3.4e-36

    See the detailed result >

    AT3G07550.2

    Model type
    Protein coding
    Short Description
    RNI-like superfamily protein
    Computational Description
    RNI-like superfamily protein; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT5G23340.1); Has 6516 Blast hits to 2862 proteins in 227 species: Archae - 0; Bacteria - 210; Metazoa - 2727; Fungi - 707; Plants - 2248; Viruses - 0; Other Eukaryotes - 624 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR