K09251

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09251

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09251

Determination of introduced cDNA(s)

  • J023007F11 - Rice Full-length cDNAs - Original: J023007F11

    full reading [+] show sequence

    Nucleotide sequence: J023007F11 - full reading 
    GAGTTTTTCT GTTCCTGATT AGCGGCGGAG TGTGCCGTCC TCGCTTTCAC 
    ATCCAATCAA TACCAAGAAA AAATAAGAGC TTTTTTTTTA ACGCTAATAA 
    TCCGAAGCAC TCCCTGAATC CAACCCATCC GCGGCTGCTG CTGCTGCAGC 
    AGAGATAACG AATCAGATCG AGCCGGGAGC TCTGGTTGTT CGTCTCTCGG 
    TTCAGGTCAA CACCTCGGGA GTTCTTGCTT CGGTTTGAAG CGAGGAGCTC 
    TGTTCTTTTC CCCGTTTCTT GGTACTGGTG ATTCTTGGCT TCGCCGTGCT 
    GGAATCGGTG CAGCTTTAGG GGGGGATTTG GGGGAGGTTT TGATGCGATT 
    CAGAGAGTAA AGCTACATCA TTTCTTGCAT TTCGCGTGGT TCTTGGGGGT 
    GGATTCTTTG CGTGGTTCTG TCGAGGTCGA GCTATTTCGA CGCGTACTCC 
    AGTCTGAACC TTCTCAGAGA TCCAGGTTAG ATTGTGGTGG CTGCTTGTTT 
    CAAGAACTTC AACACCCTGA TTAACTCTTT CTGCTGATAA GTAGATGGAT 
    GGATCATGTG ATTGCATTGA GCCGCTCTGG CAGGCGGATG ATCTCCTTGT 
    AAAGTATCAG TACATATCTG ACTTCTTTAT TGCGCTCGCT TACTTCTCGA 
    TCCCTTTGGA GCTCATATAT TTCGTTAAGA AGTCAGCATT CTTCCCTTAC 
    CGATGGGTGC TTATACAATT CGGCGCATTC ATTGTTCTTT GTGGGGCAAC 
    CCACCTGATA AATTTGTGGA CTTTTGCCAT ATATACCAAG ACTATAGCTG 
    TGGTACTGAC AGTGGCGAAA GCAGCGACAG CGGTTGTTTC GTGCATCACA 
    GCTTTGATGC TTGTGCATAT AATTCCTGAT TTGTTGAATG TGAAGTTGAG 
    AGAGAGATTT CTGAAGGATA AGGCTGATGA GCTTGATAGA GAGATGGGGA 
    TTATAAGAAC ACAAGAGGAG ACAGGAAGAC ATGTCCACAT GCTGACCCAT 
    GAGATAAGAA GCACACTTGA CAGGCACACC ATTCTGCGAA CTACGCTCGT 
    CGAGCTGGGA AGGACTCTTG TTTTAGCGGA GTGTGCCCTG TGGATGCCAA 
    CACGCTCTGG ATCGGCCCTT CAGCTCTCTC ATACGATATA TAACAGCGCA 
    GCAATTGGAT CAGTTGTTCC TATCAACCTT CCCATTGTCA GTAAGGTTTT 
    TAATAGTAAC CGTGTAGTAA AAATTCCGCA TACCTCCCCG TTAGCTTCGA 
    TAACGGCTGA CAAAAGCAGG TATGTGCCAC CAGAGGTTGT GGCTATCCGT 
    GTTCCACTGC TGCACCTTAC GAATTTCCAA ATAAATGATT GGCCTGAGCT 
    ATCTGCAAAA AGCTTTGCAG TAATGGTTTT GATGCTCCCT CCAGACAGTG 
    CAAGAGAATG GCGGCCGCAT GAACGGGAGC TTGTTGAAGT CGTTGCTGAT 
    CAGGTAGCGG TCGCATTGTC TCATGCTGCC ATTTTGGAAG AGTCCATGCG 
    GGCCCGTGAT CTACTAATGG AGCAAAACAT TGCTCTTGAT GCAGCACGTC 
    GGGAGGCAGA AATGGCTATT TGTGCCCGTA ATGATTTTCT TGCTGTAATG 
    AACCATGAAA TGCGGACTCC TATGCGAGCA ATCGTTTCTT TGTCCTCTCT 
    CCTTTTAGAA ACAAATCTTA GTGCTGAACA ACGCCTAATG GTTGAGACTA 
    TACTAAAGAG TAGCGATCTT CTGGCAACTC TTACGAATGA TGTTTTGGAC 
    GTTTCAAAGC TTGAGAATGG GAGTCTTGAG CTGGAAATTG CACCTTTTAA 
    TTTGCATTCC ACCTTTACAG ATGTGGTTAA TTTGATTAAG CCAGTAGCAG 
    CGTGCAAGAG GCTCTCGGTT ATGGTCACTT TGGCACCAGA GTTACCTCTA 
    CATGCTATTG GTGATCAAAA GCGATTGATG CAAATAATCC TAAATGTTGC 
    CGGGAACTCC ATTAAGTTCA CAAAGGAGGG TCATGTTTCG ATTACAGCTT 
    CTATGGCCAG ACCAGATGCT TTGAGAGGTC CACATGAACC TGACTACCAT 
    CCAGTTGTCT CTGATGGATT CTTTTACCTG GCTGTTCAGG TTTGCTCATG 
    AACATTTTCT ATGTTCGCTA CTTCCTCTTA TCTCCAGTCT ATTAAGATTA 
    TAGTTATACA TGGTTGAACT TTATCTGTTA CTTGTTATTA TGCTTCACAA 
    GTTCACCTGT GTGTTGTAGC GCATCTAATG TCCAACAAAC CACTGATTTA 
    GTTCTCGCAA TCTGTATAAG TTGCCTTGTT TTGTGTTAGA GGGATATTAA 
    GATAGGATAC CACGTACTAA ACATTTAGTT GTTTTATGAC TTGATCTTTT 
    TTCTATTTCT GTAGGTAAAA GACACAGGCT GCGGAATCAG CCCTCAGGAT 
    ATGCCCCACA CATTCAGAAA GTTTGCACAC CCTGAAAACG CAGGCAAATG 
    GAACAGTGGC AGTGGATTGG GGCTGGCCCT TTCCAGAAGA TTTGTCAGTC 
    TAATGGAAGG TAACATCTGG CTCGAGAGCG AAGGCGTCGG GAAGGGCTGT 
    ACCGCGATGT TCTTTGTGAA ACTTGGCATG CCTGAGAAAC CAAATGCAAA 
    CCTCCGAAGA ATGGCGCCGC ACCCTCTACA GCCAAACCAA GGAGCTGGAG 
    GCCCTGATGC CCTCAGTATA TCCATAATGG ACAGCAACCC GAGGGTTCCT 
    CGGGTTCGCT ACCAATCAAG CGTATGAGAA GCACCGATGA TGCCATCGCC 
    ATGCCAAGGC AGAGCATCCG ACCCAGTTTT GCCATCACAG TTTACAGCTC 
    CATTTGCAGC TCTCTTTTTG ATGTATGGAT GGTAGATGTT GTTCTTGTCC 
    ATCAGTGGAG GTACCTTGGG CATGCTGGTA TAAGTTTCAT TGGCATTCTT 
    GAATCTTGAT TTCAGTTGTG AGGGTGATTG GGTGGTCTTA AGTGGTGACA 
    ATTGTGAAAG CTGATGTAGT GATCTTTTGC AGCTCTCTTT TTGATGTATG 
    GATGGTAGAT GTTGTTCTTG TCCATCAGTA GAGGTACCTT TTGGGCATGA 
    TGGTATAAGT TTCATTGGCA TTCTTGATTG CAGTTGTGAG GGCGATTGGG 
    TGATCTTAAG TGGTGACAAT TGGGAAAGCT GATGTAGTGA TCTGTTGTCT 
    GCACGAGTCT GAAGTTACTG GGAAGTGCCA ATTTACTGCA AGTGACAGTG 
    AACATGAAGG TCTATGGCCA TCTTACATCT CTGATACCCT GAGCTATAGA 
    AGAGCTTGGA CGAACGTGTT TATTTTTCTT ACTTTTTTTT CCCTAGATTA 
    GGGCTACAAC CTGGAAGGGA TCGATCTACT AGCTGATTGC AGTATCATTT 
    GTACTTTTTG TTTTTTTTTT CTGAAATAAG AGTATCAGTG GTAATTGTAA 
    GCGTTACTGC AGTGCTTTAT AAGCACAAGC AAATTATCAT CAAATCAAAT 
    TAT

    Gene models with high sequence identity

    1. AT1G66340.1 [+] show detail - Signal transduction histidine kinase, hybrid-type, ethylene sensor
      E-value: 0; Score: 682.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Signal transduction histidine kinase, homodimeric 6.1e-15
    superfamily ATPase-like, ATP-binding domain 1.8e-15
    HMMPfam Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain 1.3e-11
    HMMSmart Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain 1.89999859865865e-18
    Gene3D ATPase-like, ATP-binding domain 1e-05
    superfamily SSF55781 1.7e-07
    HMMPanther PTHR23283 0
    HMMPfam GAF 1.8e-07
    ProfileScan Signal transduction histidine kinase, core 0
    HMMSmart GAF 3.70000251046782e-13
    HMMPanther PTHR23283:SF17 0
    Gene3D ATPase-like, ATP-binding domain 7.6e-11
    superfamily ATPase-like, ATP-binding domain 6.7e-16
    HMMPanther ETHYLENE RECEPTOR 5.3e-27
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 5.3e-27
    ProfileScan Signal transduction histidine kinase, core 17.987
    HMMPfam ATPase-like, ATP-binding domain 2.4e-14

    See the detailed result >

    AT1G66340.1

    Model type
    Protein coding
    Short Description
    Signal transduction histidine kinase, hybrid-type, ethylene sensor
    Curator Summary
    Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Is regulated by RTE1.
    Computational Description
    ETHYLENE RESPONSE 1 (ETR1); CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, homodimeric (InterPro:IPR009082), Signal transduction histidine kinase, core (InterPro:IPR005467), Signal transduction histidine kinase, hybrid-type, ethylene sensor (InterPro:IPR014525), ATPase-like, ATP-binding domain (InterPro:IPR003594), CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661), GAF (InterPro:IPR003018), Signal transduction histidine kinase-related protein, C-terminal (InterPro:IPR004358); BEST Arabidopsis thaliana protein match is: ethylene response sensor 1 (TAIR:AT2G40940.1); Has 102721 Blast hits to 98263 proteins in 3046 species: Archae - 757; Bacteria - 90102; Metazoa - 18; Fungi - 1611; Plants - 2314; Viruses - 21; Other Eukaryotes - 7898 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR