K09328

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09328

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09328

Determination of introduced cDNA(s)

  • J033150M21 - Rice Full-length cDNAs - Original: J033150M21

    full reading [+] show sequence

    Nucleotide sequence: J033150M21 - full reading
    GTGTGTGCAT TTCTACAATC TTTTGTTGCC CATTCATCTG GGTTTTCTTC 
    TGCTTCTTTT TTTTTCCTAG AGAGTACGGT TTTCTTTGTA ATTCTTTAAT
    TTGTTGCAAC CATGAATGTA TTGGCATCTA AGATCTTCCC TTCCCGCTCC
    AATGTTGCCA GCGAGCAACA ACAATCGAAG CGCGAGAAAG CAACTATTGA
    TGACGCTAAG AACTCGTCCA AGAACAAAAA TCTTGACCGC AGTGTCGATG
    AGAGTGTGCT TGGAATCATT CTTGGAGGTG GTGCAGGGAC TAGATTGTAT
    CCCCTCACCA AGAAGCGTGC CAAGCCTGCC GTGCCTCTGG GTGCCAACTA
    CAGGCTTATT GATATCCCTG TCAGCAACTG TTTGAACAGC AACATATCCA
    AGATCTATGT GCTGACACAA TTCAACTCTG CCTCTCTGAA CCGTCACCTG
    TCAAGAGCCT ATGGGAACAA CATTGGCGGG TACAAGAATG AAGGGTTCGT
    TGAAGTCCTC GCTGCACAGC AGAGCCCAGA TAATCCTAAC TGGTTTCAGG
    GTACTGCAGA TGCTGTAAGA CAGTACTTAT GGCTATTTGA GGAGCATAAT
    GTTATGGAGT TTCTAATTCT GGCTGGAGAT CACCTTTACC GCATGGACTA
    TGAAAAGTTC ATTCAGGCAC ACAGAGAAAC AGATTCTGAT ATTACTGTTG
    CTGCCCTGCC AATGGATGAG AAACGTGCAA CTGCATTCGG CCTCATGAAA
    ATTGACGAGG AAGGGAGAAT AGTTGAATTT GCAGAGAAAC CAAAAGGAGA
    ACAATTGAAA GCAATGATGG TTGACACTAC CATACTTGGC CTTGACGACG
    TGAGGGCAAA AGAAATGCCT TATATTGCTA GCATGGGTAT CTATGTGATT
    AGTAAAAATG TAATGCTTCA GCTCCTCCGT GAACAATTTC CTGGAGCTAA
    TGACTTTGGA AGTGAAGTCA TTCCAGGTGC AACAAACATC GGAATGAGGG
    TACAAGCTTA CTTGTATGAT GGTTACTGGG AAGACATTGG TACCATTGAG
    GCATTCTATA ATGCAAATCT GGGAATAACG AAAAAGCCTG TACCAGATTT
    CAGTTTCTAT GACCGGTCTG CTCCAATTTA TACACAACCT CGACACTTGC
    CTCCTTCGAA GGTTCTTGAT GCTGATGTGA CAGACAGTGT CATTGGTGAA
    GGTTGTGTTA TTAAAAACTG TAAGATACAC CATTCAGTAG TTGGACTCCG
    GTCCTGCATT TCTGAAGGCG CAATAATAGA GGACTCATTA CTCATGGGAG
    CTGACTACTA CGAGACTGAA GCAGACAAGA AACTCCTTGG TGAAAAAGGT
    GGCATTCCCA TTGGTATTGG GAAGAATTGC CACATTAGAA GGGCAATCAT
    CGACAAGAAT GCTCGTATTG GAGATAATGT GAAGATAATC AATGTTGACA
    ATGTCCAAGA AGCTGCAAGA GAGACTGATG GATACTTTAT CAAAAGTGGC
    ATTGTTACCG TGATCAAGGA TGCTTTGCTC CCTAGCGGAA CAGTTATATG
    AAGTAGCTGC GTAATATGTG ATGGGGCATC GGCGACGAGC ACCAGGCGGG
    CATTATAAGA AGAATAAAAG CAGTTCAAGG CACTTTATTC CCTTTTTTTT
    TCTTCTGTTC TTCCTCTATT GTGTTAGGAT AAATGTAATG GTAGAAGCAA
    CTGTTTTTCA GATGTTTTGG GAGTGAATGA TACCGTGCTT GAATTTTCC

    Gene models with high sequence identity

    1. AT5G48300.1 [+] show detail - ADP glucose pyrophosphorylase 1
      E-value: 0; Score: 784.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Glucose-1-phosphate adenylyltransferase 2.1e-209
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    PatternScan ADP-glucose pyrophosphorylase, conserved site 0
    HMMPfam Nucleotidyl transferase 1.6e-73
    Gene3D no description 1.3e-51
    HMMPanther GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE 4.9e-213
    HMMPanther SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 4.9e-213
    superfamily Nucleotide-diphospho-sugar transferases 9.4e-62

    See the detailed result >

    AT5G48300.1

    Model type
    Protein coding
    Short Description
    ADP glucose pyrophosphorylase 1
    Curator Summary
    Encodes the small subunit of ADP-glucose pyrophosphorylase. The small subunit is the catalytic isoform responsible for ADP-glucose pyrophosphorylase activity. The presence of the small subunit is required for large subunit stability. Two isoforms of the small subunit (ApS1 and ApS2) have been described. ApS1 is the major small subunit isoform present in all plant tissues tested.
    Computational Description
    ADP glucose pyrophosphorylase 1 (ADG1); FUNCTIONS IN: glucose-1-phosphate adenylyltransferase activity; INVOLVED IN: photoperiodism, flowering, starch biosynthetic process; LOCATED IN: heterotetrameric ADPG pyrophosphorylase complex, apoplast, chloroplast, chloroplast stroma; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-1-phosphate adenylyltransferase (InterPro:IPR011831), ADP-glucose pyrophosphorylase, conserved site (InterPro:IPR005836), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: ADP glucose pyrophosphorylase large subunit 1 (TAIR:AT5G19220.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR