K09339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09339

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09339

Determination of introduced cDNA(s)

  • J013022N13 - Rice Full-length cDNAs - Original: J013022N13

    full reading [+] show sequence

    Nucleotide sequence: J013022N13 - full reading
    GGGATGCTTG GCCGGCAATA GAGAACAAAC TCTCCACCTT CTAACCGCTT 
    CCTTGCTTGC TGCCATAAGC CGCTGAGGTC ACCACGGGCG GCCGACCACC
    ACCGCTGCCG ACCCATGTCG CCGTTCGCGG CCGCCCGGCT GACCATGCAT
    GACCCTCGTC GGCCTCCTCG CGTAGGTCAC TGCTGGCCTC CTTGCACCGT
    GGGCCACAGC CTCACGCCGC GTCAGTCGTG CCTCGCCAGC AATGGCCATG
    CATCGCTCCA GCTAGATCCA TGTGCCGCCG GCCGCTGCCT TGCACACCAC
    CGTCCGCCAC CTCACACGCC GTCAGTTGCG TGGCCTCCAA CACCTGCCGA
    CGAGCCGTTG TTGTCGCCGG CTCTGACCAG ATCTGGCAGG AGACACCAGA
    TCCGGCCACG CGCCACCGGT CGCTAGAGCC CACTCCCAAA GTGCCACCGG
    CTCTCCCTCT TTGCCTCCCG GTGCTGCGGC GGCTGTCCCC GAGGCCATGG
    GATCAGGCCT CAGACCTCCG GGGGGAGAGG GAAGGCCCCG CTGCCGCTGT
    CCTTGCAGTT ACATGGTTTT CCGGCGGCTT GCTCAGGCGG CGGTGAGGTG
    GAGAAGGGAG GAGGTGGTGG GTGGCAGCAG GGGAGGGAGA CATCGCCCAT
    GTCGCCCAAT CCTAGAGCGA CGCAGGGGCG CAAATGGATG GTCTCTCCTC
    TGTGCTCTTC TTCCCAGCAT ATCTCAATAA TTCAGTTGCT GGGGAGTACC
    ACATGCATCA GATGCCGTGT TGGCACATTG TAAGAGAGCA AAGGAGCCTT
    GAGGTGGTGA TTCAAATTGT GGTGCAAATT ACACGTGGAG TTGAAGCATA
    TGCATGGAGT AGCCATGGGC TAGCTAGCTA AGCTGCTTAC CAGTGGATGG
    TAACATTGTG AGCTACATGA TTGACGACCT TGACTAGGAC ATTATCGCCT
    TCTCTTGCAT ACAGGGTTGG CCCCGGGAAC TTGCCATTGA CAGTGAGGAT
    AGGCTTGGTT GAGCAAAGCC GTGTCATGTT CCGCATGACC ACCTGCACAA
    GACACAGAAA AGACAGACAA AACCGTGTTA TCATGCGGCA AAGTTTGATG
    ACGATATATC CTCACATTGA ACTTGTAATG CCGGGTGATG GCGTGGGCGC
    TGAGAGCCTG AAGCAGGAAG CAGGCGGCCA TGAGGAGCAG GGAGAGCCGG
    CGTGACTCCG GCAGGACGGC CATGTTTGCT GCGTGACCAG CGGCAGGGGA
    AGGAGAACTA AGAGCTGGTG AGAGTGCAGT GCAGTGCATG GAAATACGGA
    GGTAACGAAT GCTTATAATG GCGCACTGGC TAGATAGGAG GGAATGGGCG
    GTGTTGGGTT TTTAGCTGCC ATGTCGTTTT AAAATTTAGG TGGGGAAGCC
    TTGCTTAACA AGGCTAGGAA CCTTCTGATT CATTTACTTT CACGACCATT
    CGCCTAAATT TTACCAGCCC AATCCCAGCT GCTGCTGCTT CTGTACATGC
    CTGATAGTGC ATTCCTTCAG TACCACATAA AGCTACCTAC CCGATTACTC
    CACTATGCTG CCGCACCCAG TTTCTGGCTG TTCATACTTG GTGAAACCTT
    CACTTAATTA GCTATACATA CACTCTTGTT TGATGCATAC TCGTACAAAT
    TAATATTCTT GCTGCGTTCA TATATATATA TGTCCGTCCT TTTCC

    Gene models with high sequence identity

    1. AT2G38080.1 [+] show detail - Laccase/Diphenol oxidase family protein
      E-value: 2e-15; Score: 21.60

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cupredoxin 1.6e-10
    Gene3D Cupredoxin 2.7e-09
    HMMPfam Multicopper oxidase, type 3 2e-14

    See the detailed result >

    AT2G38080.1

    Model type
    Protein coding
    Short Description
    Laccase/Diphenol oxidase family protein
    Curator Summary
    Encodes a protein with similarity to putative laccase, a member of laccase family (17 members in Arabidopsis). Might be involved in cell wall biosynthesis. Mutants have a mild irregular xylem phenotype.
    Computational Description
    IRREGULAR XYLEM 12 (IRX12); FUNCTIONS IN: laccase activity; INVOLVED IN: secondary cell wall biogenesis; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multicopper oxidase, type 3 (InterPro:IPR011707), Laccase (InterPro:IPR017761), Multicopper oxidase, type 2 (InterPro:IPR011706), Cupredoxin (InterPro:IPR008972), Multicopper oxidase, copper-binding site (InterPro:IPR002355), Multicopper oxidase, type 1 (InterPro:IPR001117); BEST Arabidopsis thaliana protein match is: laccase 10 (TAIR:AT5G01190.1); Has 9472 Blast hits to 8326 proteins in 1422 species: Archae - 45; Bacteria - 3703; Metazoa - 467; Fungi - 3359; Plants - 1600; Viruses - 0; Other Eukaryotes - 298 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR