K09405

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09405

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09405

Determination of introduced cDNA(s)

  • J013035H08 - Rice Full-length cDNAs - Original: J013035H08

    full reading [+] show sequence

    Nucleotide sequence: J013035H08 - full reading 
    GTGCAGGATA AGCGCTGGCC ATATGTGTCA ATCCCTTTGG CAAGAGGTGA 
    CAGACCTGAA GATTGGGTTC CGACGGAAGA TGCTTCAGTT GATTATGACG 
    ATAACTATGA TGGGATTGGG GACATACTCC CTGGCCAGAA TGAGGATATT 
    GTGGATATAT TCTCAGCGCG TTCTTACAGT AATGAAGGGT ATCACCATGT 
    TTCAGAAAAG GATGTGGAAG AATCTCCAAC AGGTCTTACA TTAAAGAACA 
    AATGGGAGGA TACTCACTGG TTTTCTATTT GGTGGCAACA ATTTGTTGAT 
    GCTGCAACGT TGGAGAGTTC AGTGTCAAGA AAGATGGATT CTACCTGCTT 
    GAGTGTCATC GGAATCTCAT GGAATTTAAT CATTGCACCT TGGAAAATGC 
    TATTTGCTTT CATTCCCCCT TATGAAATTG CTCATGGCTG GATCGCTTTT 
    ATTTGCTCAC TAATCTTCAT AAGTGGTATT GCTTATGGGG TTACTAAGAT 
    TACAGATCAG ATAAGCTGTG TCACAGGGTA AGTCCATATG TTATAGCATT 
    CACAGCACTG GCTGCTGGAA CATCATGGCC TGATCTAGTT GCAAGCAAGA 
    TAGCGGCTGA GCGTCAAATC ACCGCCGACT CCGCAATTGC CAACATCACT 
    TGCAGGTACA TTTCTGCACA TCTCCTCTCC AATTAGTTGT TCATGCCTAC 
    CTTCAACCTT TTGTAAATTT ATCTTATCGA GGCGGGATAA ACGGTATATC 
    TTATTTCCGC AGCAATTCGG TGAACATATA TGTCGGCATT GGTGTTCCAT 
    GGTTGGTGGA CACAATGTAC AACTATCTAT TATATAATTA AAGAAATAGA 
    AAAAGGAGCC TCCACGTTCG CTCTCATGGT CTAGAAATTC TCACATTAAT 
    CGGAGAAAAA GAAAAAACAG AGTCCATATA GAAATACAAT TTAGAAATAG 
    CTAAAATTCA GAATTAAAAA AAATAAGGAA TATTAAAAGA GGAGACTAGA 
    GTCCATATAG AAATACACTT TAGAAATAGT TGAAATTCGG AATTAAAAAA 
    TAAGGAATAT TAGAAGTAGA GTATAGAGTC CATATAGAAA TACAATTAGG 
    AAATAATAGA AATTCTGAAT TAAAAATAAG GAATATTAGA AGTAGATTAT 
    AGAGTCCATA TAGAAATATA ATTAAGAAAA AAAATAGAAA TTCGAAATTA 
    AAAAATAAGA AATATTAGAA GTAGAGTATA GAGTCCATAT AGGAATTTAA 
    AACTAACTAA AATTTGG

    Gene models with high sequence identity

    1. AT2G47600.1 [+] show detail - magnesium/proton exchanger
      E-value: 5e-70; Score: 49.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MAGNESIUM/PROTON EXCHANGER 1.8e-10
    HMMPanther SODIUM/CALCIUM EXCHANGER 1.8e-10
    HMMPanther gb def: Hypothetical protein ZC168.1 4.4e-06
    HMMPanther SODIUM/CALCIUM EXCHANGER 4.4e-06
    HMMPfam Sodium/calcium exchanger membrane region 6.7e-07

    See the detailed result >

    AT2G47600.1

    Model type
    Protein coding
    Short Description
    magnesium/proton exchanger
    Curator Summary
    Encodes a magnesium/proton exchanger, member of putative Na+/Ca2+ antiporter gene family
    Computational Description
    magnesium/proton exchanger (MHX); CONTAINS InterPro DOMAIN/s: Sodium/calcium exchanger membrane region (InterPro:IPR004837); Has 2505 Blast hits to 2112 proteins in 583 species: Archae - 12; Bacteria - 368; Metazoa - 1819; Fungi - 7; Plants - 67; Viruses - 0; Other Eukaryotes - 232 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR