K09407

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09407

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09407

Determination of introduced cDNA(s)

  • J023113A03 - Rice Full-length cDNAs - Original: J023113A03

    full reading [+] show sequence

    Nucleotide sequence: J023113A03 - full reading 
    GCCAACCACT TCCCCTATCT ATAAATAGAG AGGAGAAGGG AGAGTGAGTG 
    TGAGTTGGTC ATGGCGGCGA TGGGCAGCAA GGATGGCGGC GGCGGCGGTG 
    GCGGGATGGC GGCGCAGGCT GGGAGGCTCG GGGTGGTCGC CTCCGTGGCG 
    TTCAACCTCG CCGCGCTCGC GTTCTACCTC CGCCGGAGAT ACTTCGGCGG 
    TGACGACGCC GCCGCGGTGA GGAAGAAGGC GGAGGCGGAG GTCGCGCCGT 
    CCTCCGGGAA GCCGCCGGTG ACCAAGGACT CAATCATCAA CCTCGACCAC 
    GGCGACCCGA CGATGTACGA GGCGTTCTGG CGCGGCGGCG CCGGGGAGAG 
    GGCGACGATC GTGATCCCGG GGTGGCAGAC GATGAGCTAC TTCTCCGACG 
    TGGGCAGCCT GTGCTGGTTC CTGGAGCCCG GGTTGGAGCG GGAGGTGCGC 
    CGCCTCCACC GCCTCGTCGG CAACGCCGTC GCCGACGGCT ACCACGTGCT 
    CGTCGGCACC GGATCCACCC AGCTCTTCCA GGCCGCGCTC TACGCCCTCT 
    CGCCGCCGGG CCCCTCCGCC CCCATGAACG TCGTCTCCCC CGCACCATAC 
    TACTCCTCGT ACCCGGCGGT GACGGATTTC CTCAAGTCGG GGCTGTACAG 
    GTGGGCCGGC GACGCCAAGA TGTTCGACGG CGACACCTAC GTCGAGCTCG 
    TCTGCTCGCC GAGCAACCCG GACGGCGGCA TCCGCGAGGC CGTGCTCAAG 
    TCCGGCGACG GCGTCGCCGT CCACGACCTC GCCTACTACT GGCCGCAGTA 
    CACCCCCATC ACCAGCGCCG CCGCCCATGA CATCATGCTC TTCACCGTCT 
    CCAAGTGCAC CGGCCACGCC GGCACCCGCC TCGGGTGGGC GCTGGTGAAG 
    GACAGGGCGG TGGCGCAGAA GATGAGCAAG TTCATCGAGC TCAACACCAT 
    CGGCGTCTCC AAGGACTCGC AGCTCCGCGC CGCCAAGATC CTCAAGGCCA 
    TCACCGACGG CTACGATCGC GCGCCCGCCG CCGGCGACGA CGACGACGAC 
    TCGAGCCGAC TGTTCCACTT CGCCCGCCGC AAGATGGTCT CTCGCTGGGC 
    CAAGCTCCGC GCCGCCGTCG CCGCCTCCGG CATCTTCACC CTCCCCGACG 
    AGCTCCCCGG CCACTGCACC TTCGCCAACG AGACCGTCTC CGCCTACCCC 
    CCGTTCGCGT GGCTGCGCTG CGGGAAGGAA GGGGTGGACG ACCTGGAGGG 
    GTACCTGCGC GAGCGCAAGA TCATCAGCCG CGGCGGCGGC AAGTTCGGCG 
    CCGACGGGAG GGTGGTCAGG ATCAGCATGC TCGACACCGA CGAGGCGTTC 
    GCCATCTTCG TCGACCGCCT CGCCGCCATG AACTGATCGG TCGATCGAGC 
    GAGCGAGCTC GCCCCAGCTA GGGCTTGATC TTGAATCTTG ATCGATGTCG 
    ACGATGAGAT GGTCAGTTAA GTTGCGAGGA TTAAGATCAA GCTTAATTAG 
    TTATCGTCGT CGTCTTTGGT TGCTTCATCA AGTTCGGTTC TAGATATCGA 
    TCTGGGGTGC ATGCATGGTA ATGTGCTTTG GTTAATATTA GTCCAAAACT 
    CTATATAATT TTGGATCGAC TCTTAAAATT TCGATGTTGT GTTGTGAGAC 
    TTTAATTTGT GAGTTTGTGG CTGGTTGGAT ACC

    Gene models with high sequence identity

    1. AT4G24670.2 [+] show detail - tryptophan aminotransferase related 2
      E-value: 2e-105; Score: 380.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 2.5e-90
    Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 2 1.2e-36
    superfamily Pyridoxal phosphate-dependent transferase, major domain 3.9e-70
    HMMPanther SUBGROUP I AMINOTRANSFERASE RELATED 0.00029
    HMMPfam Allinase, C-terminal 4.2e-139

    See the detailed result >

    AT4G24670.2

    Model type
    Protein coding
    Short Description
    tryptophan aminotransferase related 2
    Curator Summary
    Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.
    Computational Description
    tryptophan aminotransferase related 2 (TAR2); FUNCTIONS IN: L-tryptophan:2-oxoglutarate aminotransferase activity, carbon-sulfur lyase activity, L-tryptophan:pyruvate aminotransferase activity; INVOLVED IN: in 12 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Allinase, C-terminal (InterPro:IPR006948); BEST Arabidopsis thaliana protein match is: tryptophan aminotransferase related 1 (TAIR:AT1G23320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR