K09435

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09435

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09435

Determination of introduced cDNA(s)

  • J023128H24 - Rice Full-length cDNAs - Original: J023128H24

    full reading [+] show sequence

    Nucleotide sequence: J023128H24 - full reading
    GTTTCATTCC ACCCTCTTCC GATCCCCAAC CGCCGCTGGT CCGTATCCAT 
    TCCACTCTCC TCCGACCCCT ACCGCTGCCG GAGTGCTAGG GCATCACACG
    ATGAGTGTTG CAACTGAAGC ATGCCCTTCA CCAAAGCTAC ACACAAGACT
    AAGGCTGTGG GAGTTTGCAG ACCGTTACGT ATTTGAACCA GTTGACGGTC
    TTGCTGATTT GTTCCTGTCA GTTGATCGGA CAAATGGATC AATGAGTCTA
    GTGGAAGAGT TGCCACCTCG TGGTCCCTCT ACAAATCCTA AAGTTAGAAT
    AGTTTTTGGT GTGATTGGAG TGCTCAAACT TGCAGTTCGG TCGTACTTTC
    TTGTGATCAC TGGCCGTGAT TGTGTTGGAT CCTACTTGGG GCATGCAATT
    TTCAAATTGA CGGGACTAAA AGTTCTGCCA TGCAATAACT CGTTAAATAC
    TTCTTCTGCT GAGCAGAAGA AAATGGAATC AGAATTTTCG GAACTTCTGG
    ATGCAGCAGA GAGGACTATA GGCCTGTACT TCTCCTATGA TGTCAACTTA
    ACACTAACTT CACAGAGGCT GCATGATCTA GGAGATCAGT TTAAGTCACT
    TCCACTTTGG AGACAGGCAG AACCAAGATT TCTTTGGAAC GGTTACTTGT
    TGGAGCCTCT AATTGAGAAC AAACTGCACC AATACTTACT ACCAGTCATT
    CAAGGAAGTT TTCAGAGTAT CCATGCAGAA GTTGGGTCAG AGAAGGTAAA
    TGTGACCCTG ATTGCACGTC GGTGTACACG TAGGATAGGT ACCCGGATGT
    GGAGGCGAGG AGCTGATCCA GAGGGTTATG CTGCAAATTT TGTTGAATCA
    GAGCAGATAA TGCAATCGAA AGAATTTACA GCATCATATG TGCAAGTTCG
    AGGTTCTATG CCTTTTTTGT GGGAACAAAT TGTTGATTTG ACATATAAAC
    CTAGTTTTGA TGTTGTCAGA GTAGAGGAGG CGCCTCGTGT ACTTGAACGG
    CATTTTCATG ATTTACAAAA GAAATATGGA GCTGTCGTGG CTGTTGATCT
    TGTCAATACA CATGGTGGCG AAGGTCGCCT GTATGAAAGA TATGCAAAAT
    CAATTGAGCC TATCTTGAGT GAAGATATAA GATTTGTGCA TTTTGACTTC
    CATCAAATCT GTGGTCATAT TCACTTTGAA CGCCTTTCTC AACTGTATGA
    TCAAATTGAG GATTATCTTA AGAAGCATAG GTACTTCCTT TTAAATAGTA
    AAGGTGAGAA AATGGAAGAG CAGACCGGAA CCGTTAGAAC AAATTGTGTC
    GATTGTCTGG ATCGTACTAA TGTAACTCAG AGCATGATCG GG

    Gene models with high sequence identity

    1. AT3G51460.1 [+] show detail - Phosphoinositide phosphatase family protein
      E-value: 7e-162; Score: 567.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Synaptojanin, N-terminal 64.503
    HMMPfam Synaptojanin, N-terminal 8.6e-83
    HMMPanther SUPPRESSOR OF ACTIN (SAC) 1.6e-118
    HMMPanther INOSITOL 5-PHOSPHATASE 1.6e-118

    See the detailed result >

    AT3G51460.1

    Model type
    Protein coding
    Short Description
    Phosphoinositide phosphatase family protein
    Curator Summary
    Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development.
    Computational Description
    ROOT HAIR DEFECTIVE4 (RHD4); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, phosphatidylinositol-4-phosphate phosphatase activity; INVOLVED IN: root hair cell tip growth; LOCATED IN: plasma membrane of cell tip, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT5G66020.1); Has 1757 Blast hits to 1639 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 573; Fungi - 593; Plants - 286; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR