K09440

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09440

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09440

Determination of introduced cDNA(s)

  • J023047K04 - Rice Full-length cDNAs - Original: J023047K04

    full reading [+] show sequence

    Nucleotide sequence: J023047K04 - full reading
    GGAGGGATGT CATCGAGGAG GCGGTGGTGG TCGCCGGAGC GCCGAACCTG 
    TCTGACTATT TCCCGGTGAT CGCTGCCGCC GACGTCATGG GCGTGCGGCG
    AAGGATGGAT AATCTCGTCG GATGGGTGTA CGGCATCATC GATGTGCAGA
    TCGACCGGCG GCGGCGCCGC CGCATCGTCT GCGAGCCTCG CAAGAATGAC
    TTGCTGGATG TGGCGTTTGA CATGGAAGGA GAAGTGGAAA GCGAAGGATG
    GGTGATGAAC CAAGACACCA TGAGGGGAAT GTTCATGGAT TTGCTCGTCG
    CTGGAAGCGG CTCAACCTCA AGTACAATAG AGTGGGCAAT GGCAGAGTTA
    CTGCAAAATC CAAAGTCCAT GATACAACTT CCAGAGGAGC TCAAAGGCCT
    TATGGGCACA AAAACTCACG TTGCAGAATC AGACATCAGC CAGCTTCCTT
    ATCTCCAAGC TGTCATCAAA GAGACCCTCC GGCTTCACCC AACTGTTCCA
    ATAGCATTCA ACAAGGCTGA GGCCACAGTA GAAATCCAGG GCTACAAGAT
    ACCTCAGGGA ACAACTGTAT ATGTGAATAT ATGGGCAATT TGTAGGAGAG
    CTAAGATTTG GGATGATCTG GACAAGTTCA TGCCATACAG GTTCTTGGGT
    AGAGATATAA ATTTTCTAGG AACCAATTTT GAGTTCATAC CGTTTGGTGC
    TGGACGACGC ATCTGCCTTG GGATGCCATT AGCAGAAGGG ATGCTGCATG
    CCTGCATCTG ATGCTTGCAT CACTACTGCA TCGGTTTGAG TGGACGATCC
    CTGATGAAGT TAAGGGTGAT GACTTGGACA TGGCAGAAGA GTTTGGTCTT
    GTGTTGTCCA TGGCTAAGCC ACTTCGTGCT GTGGCCAAGG AAACATGAAT
    GCTAATGCAA AATGTTCGAT AATGTTATGT AAGACGCCAT TGCGCTTTTA
    TTTAGGTCTC CCTGCAAATG ATAGAGATTT GTATGAATTT TTGAATTGAA
    ATAGTTCTTG TGTAGGCCTT ATACTGCCTG TTTGGCAAGA GATGGAAAGC
    GGATTGGAAG TTTAGAGGAC GACTGATCAT GGGAGTTTCA TTTTTATTCC
    TATTCCTTTG TTTGATAGTA GAGATGAGAA TCATGGGAAG TATGGATGTG
    AATTGAATTT TAAGTGATAA TGTATGGCTC ATATTTATC

    Gene models with high sequence identity

    1. AT2G45570.1 [+] show detail - cytochrome P450, family 76, subfamily C, polypeptide 2
      E-value: 2e-57; Score: 50.80

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Cytochrome P450, conserved site 0
    FPrintScan Cytochrome P450, E-class, group I 8.80000265836278e-25
    FPrintScan Cytochrome P450, E-class, group I 8.80000265836278e-25
    FPrintScan Cytochrome P450, E-class, group I 8.80000265836278e-25
    FPrintScan Cytochrome P450, E-class, group I 8.80000265836278e-25
    FPrintScan Cytochrome P450, E-class, group I 8.80000265836278e-25
    FPrintScan Cytochrome P450, E-class, group I 8.80000265836278e-25
    HMMPfam Cytochrome P450 5.30000000000001e-53
    FPrintScan Cytochrome P450, C-terminal 0.0000000000000579999653854781
    FPrintScan Cytochrome P450, C-terminal 0.0000000000000579999653854781
    FPrintScan Cytochrome P450, C-terminal 0.0000000000000579999653854781
    FPrintScan Cytochrome P450, C-terminal 0.0000000000000579999653854781
    Gene3D Cytochrome P450 7.30000590915171e-60
    superfamily Cytochrome P450 3.6e-64
    HMMPanther PTHR19383:SF45 2.89997807422873e-109
    HMMPanther Cytochrome P450 2.89997807422873e-109

    See the detailed result >

    AT2G45570.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 76, subfamily C, polypeptide 2
    Curator Summary
    member of CYP76C
    Computational Description
    "cytochrome P450, family 76, subfamily C, polypeptide 2" (CYP76C2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: stem, sepal, male gametophyte, carpel, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 76, subfamily C, polypeptide 4 (TAIR:AT2G45550.1); Has 34313 Blast hits to 34043 proteins in 1718 species: Archae - 48; Bacteria - 4021; Metazoa - 12101; Fungi - 7308; Plants - 9587; Viruses - 3; Other Eukaryotes - 1245 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR