K09447

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09447

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
T2  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09447

Determination of introduced cDNA(s)

  • J023109C12 - Rice Full-length cDNAs - Original: J023109C12

    full reading [+] show sequence

    Nucleotide sequence: J023109C12 - full reading
    GGGGTGAAAT TACCCCCACA AAAACCAACT CTGCAACTCT TTACCTTTTT 
    TAGTTTGCCT TTGTTCTTTG CGGTGTTTCG TTTTCACATC CCTGGAAATT
    TTCAGAGCAA AGACAACGTT TGTTGCAAGA GGAAAGAGGG TGGATTGGTC
    AGGTTTGGTT GCAGCTTGGA TTTTTTCTTA AGAAACAAAA GGCAGCATTG
    CAGCTTAATT GATCTGGAGG GAGAGGAAAG ACAAAGATTT TTGTAATTGG
    AAATATATCG TCGTGTCAGC GGAATGCTTC TTGTGGATGT GGTGAAGACC
    GGCTGAGTTC AAGCAATTCA TGCTATGTTT ATTCTAGTGC AGAGTACGGG
    ATAATTTATG TTCCAAAAGG AATTAAATGG TCCATAAGCA GGAAGGCAAT
    AACAGTGAAC AGATGAGCAC CACTCCTGCC CCTCCGGGCG AAACCAGTAG
    ACAGATTCCA TCTAGAGATG ATGCCAAACA TGAGAAGGAA GCGGCCAACT
    CCTCATCTTC CTCATCATCA GAGGAAATAG ACGAGGATGA TTTCTTTCAG
    ATAGAAGGCC CAATACTCAG TACCCAGTAC TCCCTGTCTC CTCCACCTGC
    AGAAGGTGGC AACCGAGACG CAAAGCAGGC AGATGAACCC CATGACCCAA
    AGAGGATCCC GTCCGCTGTC TTTGCGAGAT CCAAGTCATC AACACCAACT
    GACTGGAGCA TCACCTCCAA TGAATCTCTC TTTAGCATCA ATGTCGGGAA
    TGCGAGCTTC TCCAAGGATC ACATGTTTTT GTATGGCAAG TCAGGAGAGC
    TGGGTGCTAA TGATCCATTG CCACCATTGC CAAAGCAGAG CCCAAGCTCC
    AGCCCTCTAA AAGGTGAGGT GGCCACACCA GAGAAGCCTA GTACTTCCAA
    GGAGAAGGGG GATGGGCGTG GACTCACAGA CCGGAATGGG GACGACAATA
    CAGACTATAC CCATAGCTCG TCACACCGAT CTGATGGAAG CACAACAAGT
    TTTGCATTTC CAATATTGAC AGGGTCAGCG AAAACAAGTG GGTCCTTGAA
    AGATAGCCAT CCGGAGTTAG CTCGGCAAAC CACGGCGCAG CTGACGCATC
    CCAGCGAGAT GCGTGATGAG AATGAGAATA AGGAAACACC ATTTCCAGCA
    GTTGTAATGG AGGCACCAAA AGTCGAAGCA ACCCCAGCAG CAGCAGCAAC
    AGCACCTGCA CCACCAGCAC CACCGGCCAC AACAAAATGG TTTCCTTGCT
    GTTCATGCTG CCCTTTCTGT TGCTAACAGC AAAGGGATAT GCAACTTCAT
    CATCCATGTC CATTTGCCTA TTGAATCCTT AACTAGTGGA AAGCTTTGAG
    CATTCGACAC ATTCATTTAT ACATGCTGAC ATTAGTACAA GGATAAAATT
    CCTGGTTCAA AAGGAACATC GGAAACCAAT TAATTATTTG CTCTG

    Gene models with high sequence identity

    1. AT2G03630.2 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 1e-11; Score: 68.20

     

    InterPro Scan Digest

    See the detailed result >

    AT2G03630.2

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G74220.1); Has 87 Blast hits to 87 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR