K09515

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09515

Determination of introduced cDNA(s)

  • J033093N21 - Rice Full-length cDNAs - Original: J033093N21

    full reading [+] show sequence

    Nucleotide sequence: J033093N21 - full reading 
    GACGCCTCGG CAATCCAAAG CCCTCCTCGT CCTCGCAGAG CATCCATTGC 
    CTCGATTTTC TATTCCAAAT TCCCCCACGC GAAGAACAGC CAGCGCCCTC 
    CTCCTCCTCC TCCTTCGCCT TCCTCCTGGT TTCTTGCCAT CTTTCCAGGG 
    AAGGAGGAAC CGCGGCCCGG CCGCATTCTT GGACAAGAAT TGTTGGCATA 
    AAGGAACATT TTGTTGATGT TCTAATGGAG TCAAAAGGTG GCAAAAAGAA 
    GTCTAGCAGT AGTAGTTCCA TGTACGAAGC TCCCCTAGGC TACAAGATTG 
    AGGACGTTCG CCCAGCCGGA GGAATCAAGA AGTTCCAGTC TGCTGCTTAC 
    TCCAACTGCG CTCGCAAGCC ATCCTGATAT TCCTTCACAT GCCTTTCCCC 
    GTAGAGTAGG AATTTCCTGC AATTTTTCCT TTGTTTTGTT GCAATAAATC 
    TCCCTTGGCT GGCTGCTTTC TCAATCTCTT CCCTTGTCTT CTCCGATCTC 
    TTCTTTCCTG TCTTGTCCAC TGCTCCTTGC AACACTTGAT CAAATGTCGA 
    TGTCCTTGGC TGATTCTTGG GGCTCTGCCC CTGCCTCGCC CATTGGGTTT 
    GAAGGCTATG AGAAGCGCCT TGAGATAACA TTGTCTGATG CGCCCGTCTT 
    TGTGGACCCC TGTGGTCGCG GCCTTCGTGC CCTCTCACGT GAGCAGATCG 
    ACTCGTTCTT GGATCTTGCA AAGTGTACCA TTGTATCCCA TCTTTCGAAC 
    AAGCACTTCG ACTCATATGT GCTTTCAGAG TCGAGCCTTT TTGTTTATCC 
    CCACAAGGTT GTTCTGAAGA CCTGTGGTAC AACAAAGCTT CTGCTCTCCA 
    TTCCTCGCAT CCTTGAGCTT GCTGCAGAGT TGTCACTGCC TGTTCTATCA 
    GTGAAGTACT CTCGTGGGAT GTTCATCTTC CCTGGAGCGC AGCCATCACC 
    GCATCGCAGC TTCTTGGAGG AGGTTTCTGT GCTCAACAGC TTCTTTGGTG 
    GCCTCAAGTC AGGTGGCAAT GCTTATGTCA TTGGTGATGC ATTCAAGCCC 
    AAGAAGAAGT GGCATGTCTA CTATGCCACA GAAGAGCCTG AGCAGCCCAT 
    GGTTACACTC GAGATGTGCA TGACTGGGCT GGATGCTAAG AAAGCTGAGG 
    TGTTCTTCAA GGATTCCACT GATGGCTCCT GCTCATCAGC TAAGGAGATG 
    ACTATGTTCT CTGGGATTTC TGAAATCATC CCTGAGATGG AGATTTGTGA 
    CTTTGAGTTT GACCCGTGTG GGTACTCAAT GAATGGCATT TATGGTCCCG 
    CCGTCTCCAC GATCCATGTC ACTCCTGAGG AAGGTTTCAG CTATGCAAGC 
    TATGAAGCAA TGAACTTCAA TCCTAGCTCC TTGGTCTACG ATGATTTGAT 
    CAAGAAGGTC CTGGCTTGTT TCTGCCCTTC AGACTTTTCG GTCGCTGTTA 
    CCATCTTCGG TGGGCATGGT TTTGCCAAAT CATGGGCAAA AGGTGCAGAG 
    GTTGATTCCT ACATGTGCGA TGATCTTGTT GAGCAAGAGC TTCCTGGTGG 
    CGGTGTGCTG ATGTATCAGA GTTTTACTGC TGTTACTCCT GGTGCTGTGT 
    CACCGAGGTC GACCTTGGAT GGCTGGAACA GCGATGGAGC AGAGATGGTT 
    GCGAAGAGCA AAGAGATGAG TGTCTGCTGG GAAGGAGAGA AGGCGGCGAA 
    GAAGAAAGAT GCAGATGCCT GAGAAATCGG CAGTTCTTCA ACCTCAAGTT 
    GCAAGTTTGA TTCATCTGAA GTTTCTGAGA CGCCTTATTT GGTTCTGCTC 
    TTGCGGTTTC GGTTAAGCAG CTGGCTGGGC TACCGGCAAA GCATATGTTA 
    CTTGTTCATT GTTCTTTTAT ATCTGTCTGC CCAAATAAGT GCTCTAGATG 
    GTTTGCTGCG TCTGCCATAG TGAGCAATTC AGATTGTAGT AGAATTCTTA 
    TCTGTTGCCG ATGCTCTTTA AGGGAGAATG ATATGTAACT CGATTATTTT 
    CAATAACTAT TGCAACTTCC ATAATTTTCT GTCCATTGGT TATGTTT

    Gene models with high sequence identity

    1. AT3G25570.2 [+] show detail - Adenosylmethionine decarboxylase family protein
      E-value: 1e-95; Score: 347.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan S-adenosylmethionine decarboxylase, conserved site 0
    HMMTigr S-adenosylmethionine decarboxylase subgroup 2.1e-150
    Gene3D S-adenosylmethionine decarboxylase, core 1.7e-113
    HMMPanther S-adenosylmethionine decarboxylase 9.3e-130
    HMMPfam S-adenosylmethionine decarboxylase 8.4e-122
    HMMPfam S-adenosyl-l-methionine decarboxylase leader peptide 1.7e-29
    superfamily S-adenosylmethionine decarboxylase, core 7.7e-126
    HMMPIR S-adenosylmethionine decarboxylase subgroup 1.6e-150

    See the detailed result >

    AT3G25570.2

    Model type
    Protein coding
    Short Description
    Adenosylmethionine decarboxylase family protein
    Computational Description
    Adenosylmethionine decarboxylase family protein; FUNCTIONS IN: adenosylmethionine decarboxylase activity; INVOLVED IN: spermidine biosynthetic process, spermine biosynthetic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: S-adenosylmethionine decarboxylase, core (InterPro:IPR016067), S-adenosylmethionine decarboxylase, conserved site (InterPro:IPR018166), S-adenosylmethionine decarboxylase (InterPro:IPR001985), S-adenosylmethionine decarboxylase subgroup (InterPro:IPR018167); BEST Arabidopsis thaliana protein match is: S-adenosylmethionine decarboxylase (TAIR:AT3G02470.4).
    Link
    InterPro Scan - TAIR