K09518

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09518

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09518

Determination of introduced cDNA(s)

  • J013120I12 - Rice Full-length cDNAs - Original: J013120I12

    full reading [+] show sequence

    Nucleotide sequence: J013120I12 - full reading 
    GGTTCAAAAT GCGGACAGAT TTGGTGGGAT TTGGGCAGTT GCGGTGTACT 
    GGTCACTGTT GATACTTTTT TCCCCTCTCA TATCAATTCA AATTTGGATG 
    GAATATGCTA GGTCCTCTTG GAATTCATAT TGCAAAATTA TTCGCACGGT 
    TCAGTTGTAT CAACAAGTAC AGTGGCACAG CGTGGGTCAT AAGCAAAAGC 
    TCCAAAACAA AATTCTGAAC GAAATTCTTG TTTTGGGTTG CAGAAACTTC 
    TGATCCCCCC GAAACCGAGA AAAGAGGGGA ATCTGTGAAG AGATTTTAGC 
    AGCAGTGCAA TGGAGGTATT TGGAAAATCC GTGATTGCTG AGCCCAGCAA 
    TGTGATTTAC TTGTCCAGTA TTCTTAACAC AGAAGGGCCA ATCCCTAGTC 
    ACAAGTGTGA CAAGAATTGC CAGAACGAGC ACGTCTTTGG CAACATGTAC 
    CGTTGCAAAC TGACCGGGAC CACGCACATC TGCGACAAAA ACTGTAACCA 
    GAGGATCCTC TACGACAACC ACAGCTCACT CTGCCGGGTC AGCGGGCAGC 
    TGTTCCCGCT CTCGCCGCTG GAGCAGCAGG CGGTGAGGGG GATCCGGAGG 
    AAGCATGAGG TCGACAGCAA CGAAGGGTGC TCCTTTAAGC GCAGGCGAGG 
    TGCACAACTG CATCCATCCC CTTTCGAGAG GTCCTACACC GCTGTGTCTC 
    CAATCCCAAG CCAAGTTGGA GACGGCATGG ACCTGAGCTA GAGATAACGA 
    GAATCCGTCT TTTCTTGCCC ACAGCTGGCT AATGCCGTTG TTTCGACCCC 
    TTTCTCCCTT TGACAGGATG GAACTATAAG AGCTTCCTTC TTTATAGACT 
    TACGAAGGGA TATGAGACTC TCCTTGGATG CACCGAATAA ATGTCTATGT 
    AGTATCAGTT CTAATTTATG GGACCTTGTT GTAACTCGTA ATTTTGGTTG 
    AACCGCCTAT TCTGAATTGC ATAGTACTTT CTGATAATCA TTTGATGCTA 
    TCGCTTAGAT TATTTTCCTA TACTGCATTA ATCGTGTTTA CTCTAATGGC 
    ACTTCGCCAT AACCCTTCTA TTCCATGTCT TCTTAAGGAT ACTTATATCT 
    TGTGCATGTT GGTATGATCA ACATATCAAC TATGTGAATA GCTTGATTGG 
    ATGAATGATT TTGTAAATTT GTTATAGATT AATTGGTTCT TATATGGGGG 
    GTGTGAACTA ACTGAAATTT CTGCAAGGCT GTTAGTGTGT TGCCTGGCAG 
    GCCGCTGGTA AAGTGCGACT TATTTATGGT TTCTTTTCAT ATAAACCCTA 
    TTTATTTTAC ATGATTCTCT CTTTTGCAGG TTATGTTTCT AACATTTTTT 
    TCACTGTTCT TTGTTTTTAC TCTTGAAATT TATTGTTTTG CAGGGCCTTC 
    CAGGTGCTAA CTTTTGTGGA TATATTTTTA TCTTTCATAA AACTATTTTT 
    GTATGATTTT TTTTCTTTTT GAGTGTTAAC CCATTCCTTT CTTGTGCAGG 
    TAAACTGCTG AACTGTCGTT CTGTCACCTT GTGGGAGGAA AAGAACTACT 
    TACACCAGAC CACCTGGATC CTTTTGCAGC CTAATCTGAT AACTACGTCT 
    CGTGCTGAGC AGCATGATTT CCAATTCCAG ATCATGACCC AGAAGACATG 
    AAGCTTTGGT ACTACGACTA GAGCCACTGA AACTCTAGGC TGGTATCGAA 
    GAAGAGCGCT AGCCTTTAGC TGAACCTTGC ACTTTGGGTG CCCAAGCAAG 
    CTGTTGCATT TGGAGGGATC AACAAAAAGT AGCTATCATC TGTAATTTGG 
    AGTAGAAACT CTCTGGAGAC AGCAGACATT CCTGCAACTT CTGTCGCTCT 
    ATCCGACTAG CCTGCTTCAG CACAAGCATA TTTTGTTCTG TATTTTTTTG 
    TTTAAAAAAA ACAAGTGAAA CCCTGGCTCT TCTATTTAAT TATGAAAATA 
    CTGGTGCGCT CCGGCGTGCC CTTTGCAATT CATCCTTGCT

    Gene models with high sequence identity

    1. AT5G24610.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); ...
      E-value: 5e-49; Score: 192.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G24610.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G49550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR