K09540

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09540

Determination of introduced cDNA(s)

  • J023049B09 - Rice Full-length cDNAs - Original: J023049B09

    full reading [+] show sequence

    Nucleotide sequence: J023049B09 - full reading 
    TTTGGGGAGC AGCTCGAGTA TCTCCGTATC TCCCCCTTCC CTTCGCGTAA 
    AAGAAAATCC CCCGTCTCGT CTCCTCCGCT CCTTGCGCCA TCTCGCGGCT 
    GAACAGGGGA GGGGCGCCGA TCTCCGTCTG GCGCGCAGAG CAGGGGGAGG 
    GGATCCTGAC TTCGATTAGT AAGGGTATTG GATGAAGCTT GTACTGATCT 
    ATGGAGGTGG GTGGTCCACA AGATGCTCTG GACAACAGAA GTGATGATAA 
    TGACTTTGAT AAGAATGACA ATTCTGATCC TGTTGTTTAC CAGTTAGTTC 
    GGGTTGAAGG TGATGGAACA CTTATTCCTG CTACGGAGGA TGAGGTCTTA 
    CAGTTTGAAA CTTTCCTTCA TGATGAGAAG GTTGATGATG ATCTGCCTTC 
    TATTGACGAT GTAACACATG TGGAGGAATA TTTTACTAAT GATTGCATAG 
    TGAAGAAGCC TGAGTTTGAA GAGGGGCCTT CCAAATTAGA CACTGCAGAT 
    GTACAGACAC AAAAGTTAGA TGCTGGCTTA GAGGAAGACA GGTTATGTAC 
    ATTGAATGAT TCGATAGTTC TTCCTTCAAA TTGTTCAGCT GTTCATGACC 
    AGCAGCTGGA TAAACTAAAT ACAGAACAAG GGGCAAATAT CATTGCCCAA 
    CAGGACAATG CTTCGACTGA GACTACAAAA TCAACAGTAT TAAATGACCT 
    TTCTTCTGAT AAAGAAAAGG CTGATGCCTG CTCGAAACCT GTAAATGAGG 
    CATCTGCAGG ACAATCTGTT TCTGGGGTTA CTAGTTCAGT TCCTGATTTT 
    TCCATTTTAA AGGGAGAAGT CTGCTTGGAT GATCTTACAA TGAGAGAACT 
    TCAGGAAGCA TTTAGAGCCA CATTTGGGCG TCAAACTACT GTCAAGGACA 
    AGCTATGGCT CAAAAGACGG ATTGCAATGG GGTTGATCAA TTCATGTGAT 
    GTTCCAAGTT CAGGTTGTGT TGTTAGGGAT TATAAAGTTA TTGCCATGGG 
    TGCCAAACAA GAAATACCAG TGGTTGAAGC AATACCAAAG ATGGAACTTG 
    AGGCTAATTT GGTTAGGGAC CAAGTAATGA ATCCTGGACA TGAGAGAGAT 
    TTACCATCAA GTCTTTCCTA TCATAGTGAG GAGCAACAGA GATCGTCCAA 
    GAGACTCAAA AGAGTACCAA CAGATAATGA TGAACCACAA GTAACTATTT 
    TTGCCGAACA AGGAACTACT AAGAGAATTA GAAAGCCAAC AAAAAGATAC 
    ATTGAGGAGC TCTCAGATAT TGACACTCAT GAATCCACTG GGAGACTTTC 
    TTCACCTGGA AAAAGGCATG TATATGATGA GGTGTTATTG AGACCACGGA 
    TAGCGCCTTT GCATGAGGTT GATTCGTTGA GCACAGCCTA TCCTACTAGA 
    GAAGATACTC TTGGAGGGTG TAGTGTGCAT GTGCCTTATG TTTCAAGGAT 
    GAGAAGGGGG CGCCCTAGGA GTAACTTCAT TCCATTTTTG GATCCTGAGC 
    CTTCTGTGGA ATGTACTGAG GCCCCTGCTG CAGATGTAGT GAATTTGGAA 
    AAGGAAGGTG AACGGAAGAA CCATAAGAAC ACTGGGAAGA AAGGAGTACA 
    TGTAGAAACA TCTTGTGAAA AGGATGTTCA GGGTCTGCAG GACAAGGATT 
    TTTGCGACTC TGATGACAAT CCCAAAACAA AGCGGGGTGG GAAGCGGAAG 
    CATCATCGAG CATGGACATT GTGTGAGGTT GTGAAGCTGG TCGATGGTGT 
    GGCCCGATAT GGGGCTGGCA AATGGTCCGA GATTAGAAGA CTAGCCTTCT 
    CATCATATTC GTACCGCACC TCGGTGGATC TTAAGGACAA ATGGCGGAAT 
    CTGATCAGGG CCAGCCAGAC ACAACTTTCC ACTGAAAACG ATGGTGTTTG 
    TCCACGGAAG AGCAATCCTT CTGCCATACC GATACCAGTG TCGATTCTGC 
    TACGAGTAAA AAAACTGGCT GAGATGCAGT CTCAAGCTGG CGACGTGAGA 
    GTGCCGATCA AGTTTTCAGG GCAGAGCACT ACGGTTGTAC AGGGGAAAGT 
    TTCGGGTTTC TTGTGATCCA CGTGTTGCAT GCAAATAGAG GGGGAAACCA 
    CTGAGATTGA TGTACGCTTT TGGACGTCTG TGAATACCAC ACTTGTATAG 
    CAAAGTTGTG ATCGCGACTC GCGTTCTCGT GCAAAAGAAA GAGTCGACGT 
    ATGTATTGTT TGCTCCTTTT TCTACACACG AACACTTCCT ATGTTCTCCG 
    AGAGATTTGA CTAACGTACC TTGAGATTGA CATAGTCACC TTAAACACCT 
    TGTTATTGAA AGAATAAATG CTCCTTTTTC GTTTGC

    Gene models with high sequence identity

    1. AT1G72650.2 [+] show detail - TRF-like 6
      E-value: 8e-71; Score: 265.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Homeodomain-related 3.3e-15
    ProfileScan HTH transcriptional regulator, Myb-type, DNA-binding 13.899
    HMMPanther TELOMERIC REPEAT BINDING PROTEIN 1 1.4e-05
    HMMPanther TELOMERIC REPEAT BINDING PROTEIN 1.4e-05
    HMMSmart SANT, DNA-binding 9.5e-07
    superfamily Homeodomain-like 2e-09

    See the detailed result >

    AT1G72650.2

    Model type
    Protein coding
    Short Description
    TRF-like 6
    Curator Summary
    Arabidopsis thaliana myb family transcription factor (At1g72650)
    Computational Description
    TRF-like 6 (TRFL6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to cadmium ion, response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 3 (TAIR:AT1G17460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR