K09605

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09605

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09605

Determination of introduced cDNA(s)

J023143I16 - Rice Full-length cDNAs - Original: J023143I16

full reading [+] show sequence

GGGTGGAGGA GCGGAGGCGG AGGCGAACGC GAGGAGGAAG ACGAAGATGA 
GGAAGAAGCT GGGCACCCGC TTCCCCGCGG CACGGATCAA AAAGATCATG 
CAGGCTGATG AGGACGTTGG CAAGATTGCA CTAGCTGTAC CTGTTTTAGT 
ATCGAGGGCC CTTGAATTGT TTTTGCAAGA TTTAATTGAC CGAACTTACG 
AAATTACACT GCAAAGTGGT GCAAAGACAT TGAATTCCTT CCACCTAAAG 
CAATGTGTGA GGAGGTACAG TTCTTTTGAC TTCCTAACTG AGGTTGTCAA 
CAAGGTACCG GACCTCGGTG GCGCTGACTC ATGTGGAGAT GATAGAGCAT 
TACCCAGAAG AAGAAAAGCC TTGCCAAATG GAAGTGACCC AGAGAATGAG 
GAATCTCGAT CAAGCAAAAT GGCCGTAAGA AGTGCAAATA TCAGTCCCAG 
AGGACGTGGG AGAGGTCGAG GTAGAGGGCG AGGACGACCA CCCACCAAGC 
GGAAGGAAGT TGGTTATGTA CAATTTGAGG ATGAGAGCAG CATGTTTGCT 
GATCAGGGCG AAGCCTTACC AGGAGAGGAG ACGGTTCCAG AGACCATCCA 
TGGCACCGAG AGCGTACCTC CAAGCACACA CCCTCCAGCA GAAGCCCCAT 
CGGCAGCAGA GATACCAGCT CCAAATCCAA AGGTGGAAGA AGCGAAAAAC 
GACGACCATC AGCCGGATTG GCCTATGCCA GATGCGATTG GGAACATCGG 
TGTCGGACCA TCCGGTTTTG GACATCTTAC GGTGCAAGTT GACGAGGATG 
AGGACTACGA CAACGAGGAT TAGCCACGGC CATCTTCTGA TTGTTATGCA 
CTAACAGGGC AGTTCTCCTG GTGTTGTAAA ATGTAAATAT GTAGCTGCAG 
CTAGCTGTGA TGTGCTGCTG ATGTAATGCA GTATGTAGTT GTCCCGTGTA 
ACTTTGTCTG TTTTCCAATA ATTGCTTGCT AGTTGCCTCA CATTGTTGAC 
ATGATTGACT ACTGAAGTGT TTTGTCAGAA TTAACCCGGT ATTGAAGCC

Gene models with high sequence identity

AT3G12480.1 [+] show detail - nuclear factor Y, subunit C11
E-value: 9e-41; Score: 164.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Histone-fold	4.4e-24
HMMPfam	Transcription factor CBF/NF-Y/archaeal histone	5.4e-19
superfamily	Histone-fold	9.4e-21
HMMPanther	NEGATIVE COFACTOR 2 TRANSCRIPTIONAL CO-REPRES	1e-117
HMMPanther	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELAT	1e-117

See the detailed result >

AT3G12480.1

Model type: Protein coding
Short Description: nuclear factor Y, subunit C11
Computational Description: "nuclear factor Y, subunit C11" (NF-YC11); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus, intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor CBF/NF-Y/archaeal histone (InterPro:IPR003958), Histone-fold (InterPro:IPR009072); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT5G19490.1); Has 1099 Blast hits to 1099 proteins in 222 species: Archae - 0; Bacteria - 6; Metazoa - 308; Fungi - 314; Plants - 371; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Link: InterPro Scan - TAIR