K09606

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09606

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09606

Determination of introduced cDNA(s)

  • J023131F07 - Rice Full-length cDNAs - Original: J023131F07

    full reading [+] show sequence

    Nucleotide sequence: J023131F07 - full reading
    GGTGGTGGTA GCGGCACGCT TCTCGCTACG CTATAGAAAC CGCCTCTCGA 
    GTAGTCGAGT CTCGAAGCAC AAATTCCCCT CGAGCCGAGA CGCCTCCTTG
    CTCCCCTCTA AACCCTCCCC CTCGCGCGGA TTCGCTTCCC CGTGTCTCCC
    AGAGGGGAGT TGGTGGTGTT CCTGGAGCTT CTTGGGGGTG GTTTTTCCAA
    GCTGCGGCGG GCTCGCCGGA GTTGGATCCG GCGGAAGAGA GGATTTCTGG
    GAAGGGTGCC GCGAAGCTGC TCGACGGCAG GCTCGTGGTG GCCTTGAGGA
    AATCGCTTCA ATTTCGAACG GGCTGTTCAG TTGGCTGGAC GATTCATTTC
    AAGAGCAGAA GTGTTTACAC CAAGCCGTAG CAGAAGAGGG AATCCTTGAT
    TTGTCGTGGG AATAAAGAGG TGCTCACCTT TGAGTTGGAC AATGCATCCC
    AGGGCTCGAA TCCACGCAGA CCCGGCTCCG GAGTTCGACC AATTCGACTG
    CCTGCCGGAT CCAGTTGTCC TCCTGATTCT GAACAAGCTG GAGGACGTGC
    GTTCGCTTGG CCGCTGCGCT GCCGTGTCGA AGCGGTTCAG CGGACTTGTT
    CCTCTGGTTT CCGATGTGTA TGTCAAGATT GACCGTGTCG TGGCCACAGA
    TGGTGATGCT GATGATGCTC TCAACCTGTC TTCGGCGAAG CCAAAGAACA
    TCTTCTCCCA TTTCTTTAAG CTTATGCTAT TCACAATCGT CAAGCCATTC
    CACAGTATGC GCAACCTGAA TGGCACGGGC AGGCCGTTGT TCCCGCTTGC
    GCAGCATTCA CCGGTACATG TGCTTAGGAA TTTCTCTGAT GTCTGGAATC
    TCCGGGTGGA GCTTCCCTCG GGAGATGTTG GGACCGAGGA GGGTGTTCTG
    CTTAAGTGGA GGGCTGAGTA TGGTAGCACA CTTCGGAATT GTGTGATTCT
    GGGAGGTACC CTGGTCGATC GCAAGCCTAT AGGCGCAGAG CATGAGTCGT
    CGGTAGAGGA TAATGGAAGC ATGCCAGAAT CTTTCTATAC CAATGGCGGG
    CTTAAACTTC GTGTCGTGTG GACTATCAGC TCTTTGATTG CTGCATCAAC
    AAGACACTAT CTTCTCCGGT CAATTATCAA GGACCATCCG ACGTTGAGGA
    GCTTGGTTTT AGCAGATGCC GATGGGCAAG GGACATTGTA CATGGGGATG
    GAGCAGCTTA GAGAGTTTAG AGAAAACAAA CTGTCAGCCT CAGCATGTTC
    CAATAGAACT CAGGTCCCAG CCTGCAACAT GAAGCTGAAA TATGCCCCAT
    ACCTTGAGCT ACCTGGTGGC ATGACATTGC AAGGTGCCAC CCTGGTTGTG
    ATCAAACCCT CCAATGATGG AGGCAGTGGT GGTCACAGCA GTCGGAAGGA
    AACTGAAGCT TTTGTTTCAA GTGCATTCGA TGAACCTTTC AGATTTGCTG
    TGAAGGCGCT GATGAAGAGA CGAACATATC TACTGGAGAT GAACGGTTTC
    TAGATAGTCT ACTTGAGTTG CAGTGGATTG TCTTTCTATC AACTGCTTCA
    AATATATCAT TTTTGTTTTT TTCTCTCAAG CAGAGCAACT TCAATCCTGT
    TTAGAATGAT GAAATGTCCA CCGCAATGCA ACCCCATTTT CTGTTGTTTG
    CTCTTTGTAT AGCAATACTA CTAGCATCCT AAATTTCCAT TTGAGTTTCG
    AATTTCCAAA TTACCAATTT CCAATCAATG TTTCTATAGT TCCTATTATT
    TCATTTCC

    Gene models with high sequence identity

    1. AT4G18380.2 [+] show detail - F-box family protein
      E-value: 6e-91; Score: 332.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G18380.2

    Model type
    Protein coding
    Short Description
    F-box family protein
    Computational Description
    F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G46170.1).
    Link
    InterPro Scan - TAIR