K09615

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09615

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09615

Determination of introduced cDNA(s)

  • J033125H15 - Rice Full-length cDNAs - Original: J033125H15

    full reading [+] show sequence

    Nucleotide sequence: J033125H15 - full reading 
    GGGAAGAAGC AAAGCAATCT CCGTGAGCGG TGATGGCGCA GCAGTGGCGA 
    TCTCTCCTCT TCCTCCTCCT CCTCCTCCTC GTGCCCTTCG CCGCCGCCGC 
    CGGGCAGGAT GCGCCGTTCG TGGTAGCACA GAAGAAGGTT GCGCTGTCCC 
    GCCCGGGTCC AGGCGTGGAG CGCCTCGCCG TCACCCTCAA CCTCTACAAC 
    CAGGGTTCCG CGACCGCCTA TGATGTTAGC TTGAACGACG ACTCTTGGCC 
    ACAGGAGGCT TTTCAACTTA TCTCTGGAAC CACATCAAAG ATTGTGGAAA 
    AACTTGATCC TGGTGCTACT GCTTCCCACA ACTTCATCTT GGAGACCAAA 
    GTGCAGGGCA AGTTTCAGGG CTCTCCTGCC ATTATCACAT ACCGTGTTCC 
    CACAAAGGCC GCACTTCAGG AGGCTTACTC AACGCCCATG TTTCCACTTG 
    ATATTCTTGC TGAGAGACCT CCCCAACAGA AGTTTGAATT GGCTAAGAGA 
    CTTGTGGGGA AATATGGGTC GCTGGTCTCC GTTGTTTCCT TTGTCGGTGT 
    GTTTATCTAC CTGGTTGCAA GCCCGTCAAA ATCCACTGCT GCAAAAGGAA 
    GCAAGAAGAG GCGCTAAATC TGTTTTGTTG CCTTTTTTTT GTTGTATTTG 
    GTTTTACAAG AATGTACTCT CTCAGGTTTT ATAAGGTTCT CCTATGTACT 
    CTAAGGGATT AACTAGACTA AGGCATCATC TGTCATTTTG GCCTTCTGTA 
    GTTGAGCATC TCGGGTGAGG CCTGAGCTGA CTGACTTAAA ATCAGAGGTG 
    TAGATTTGAT ACATCTTAAA TCATTTTAGT ACATTCAACC TTTTGTGCCT 
    GGTTCTC

    Gene models with high sequence identity

    1. AT5G14030.4 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 5e-45; Score: 178.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Translocon-associated beta 7.2e-37
    HMMPfam Translocon-associated beta 2.4e-57

    See the detailed result >

    AT5G14030.4

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR