K09620

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09620

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09620

Determination of introduced cDNA(s)

  • J033145L18 - Rice Full-length cDNAs - Original: J033145L18

    full reading [+] show sequence

    Nucleotide sequence: J033145L18 - full reading 
    GAAATGTAAA AATCCAGCCA AAATCATTGT GCGGCCCTGG TGCTCGGCGT 
    CGACTCCCGT CTCGTCTCCT CGCGAGCTCG CCCACCCGCC GCCCTGCGCC 
    GATCTCCATC GATTCCGCGA CTTCGCGAGC AGTGGCGCCG TCGTCCGTCC 
    TGCTGCTTCC GCCGCATCCT GGTTTGGGGG TTCAACTGAA CCCCCTATGT 
    CCCTCGTTAG ATCCGCCCCT GCCCGGCAAT GGGCAGCATG GACACGCCAA 
    GAGGAACAAA ATTTTTTCAA TGCGCTGCGC CAAGTAGGGA AGAATTTTGA 
    GAAGATTACG CTGCGTGTCC AGAGCAAAAG CAAAGATCAG GTCAGACATT 
    ATTACTATCG TCTTGTTCGA CGCATGAAGA AACTTCTCGG TCCTGAGTTC 
    TCGCTCGATG CAAAAAATTC CAAGGACACC ATTGCTGCTA TGCTCTGCTG 
    GTGGTCTCTG CTTGAAAAAT TTAGCTGCAG TGCATCAAAA CTGCATCTGA 
    AGCCTCGGAG ATTCAAAACT TTCGTAGAAG CATTGGGAAA TCAACTACTA 
    AAGGATAGAA ATAAAACCAG AAAAAAGTGT CCACGTGGGG ATGTGTGCCT 
    GTCCTCTTCA TCTTCGGCTG TCAACAGGAC TCCTGGAAAT GAATCTTTCT 
    CAGTAAAACT CTTGGCTGTG GATGTCTCCA ATGGTAGCAA AGTAGGATCT 
    TCTAAAGGGT CATTTTTCAA AAAGGTCACA GAACCAAATT GCAGTAACAA 
    GTCAGGTGCA ACTAAAGGGG ACCTCTCCGC CACAAGAACT GTGAAACAGA 
    AAAGAAGAGC AGGTGGTGTT GTTGCATCTG CTGCATATAA AAAATGGGAG 
    AGAGCTGCCA TGGCTGGTGT TTCTTTGGTT GCTGATGCAG CTGAAGAGCT 
    TGAGCGCAAC ACAGTGAACG CTGATGCAAG AATGTTATCT CCATCATCAA 
    GCAATGCCTG CACAGTTGAT GGTCTTGGCA CAAATCATAT AAAGGAAGCA 
    GATCAACAAG CACCTGCAAA GCTAAAGTTG CAGCTATTTC CAATAAATGA 
    AGCTACACGA AAGGCATTAG AGAAGGATGA ACATAATCCA CATCTGGAAC 
    TCACATTAAG TGCTAGGAAA AAAATATCAT CAGTACTAGA ACATTTGAAC 
    CGCAAGTGGG GCAACTCAAA CATTGCATCT GGAGAGCTTT TGCTTTTTCC 
    ATATTGTGCT CATCAAGAAG ATTTAGCTAC ATATCAGAGG TGGACCACAA 
    AAGATACTGT CGCAGTGGCT GACGTTTTCC TTTCTGTGAA TAGCCCATCT 
    GTTTTTCGAT TAAGGTATGG TTGGTTTTCC CTTGCTGAGC TTGAAGCAGG 
    CGTAAGTGAA ATATCTTTGA CTCATTTTGA GAATTGCTTG ATACCTGAAG 
    ACATCCATGC CAAATCTCCC TTAGAGGCTT GTGTGCAAAA GGATGGTAAT 
    TCGCTCAGTA GTTGTGCTCC TGAGCAACAC CCTTGTGGTT CGAAAGATCA 
    GTCAGCATTA TTGTTTGCTA TGCCATCTAG TACAGGCAAG AGTGCTCAGG 
    TGCCAGAGCA GTGCATTGAT GTTCTCCCCT CACAGTTTGG CAGGCAGAAT 
    CAAGACCAAG TTACCACGAA CCAAGTTTTT GAGGTTGATC AAGGGATGGA 
    TTGTGCTGCA GTATCTGAAG GAGAGTGGGC AGATACCCTT ACTGATATCA 
    GTGTTGGATA CTTACTGACA GAAGCTTCCA GAGGTGCTAA TACTGATTGT 
    CCAGGGACAT CTGTTGTCAA AAACACACTG TTGCTTGAGA ATCCCTGCAG 
    CTATGATTCA TTTGATGCTG CTGTTGCTCT TCATGCTTCT CGTTATAAAT 
    CAGCAGAGCA GCCAGCCCTT GCATCCCATT CAACCATCTG GGGTGCTGAA 
    GAAACCTGTG ACGCATTCAG TTTTAACCTA CCAGCATCTA GGAAGCGAGA 
    AGGTTCAAAT AATTCAGCTA GCAGCTCTCC CGATAGTGAC AGTGATGTTC 
    ATCCTTCAAA CTC

    Gene models with high sequence identity

    1. AT2G36960.3 [+] show detail - TSL-kinase interacting protein 1
      E-value: 4e-121; Score: 432.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Homeodomain-like 1.1e-08
    ProfileScan SANT, eukarya 13.155
    HMMPfam Myb, DNA-binding 3.7e-06
    HMMSmart SANT, DNA-binding 5.2e-07

    See the detailed result >

    AT2G36960.3

    Model type
    Protein coding
    Short Description
    TSL-kinase interacting protein 1
    Curator Summary
    Arabidopsis thaliana myb/SANT domain protein
    Computational Description
    TSL-kinase interacting protein 1 (TKI1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G39380.1).
    Link
    InterPro Scan - TAIR