K09638

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09638

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09638

Determination of introduced cDNA(s)

J033036E19 - Rice Full-length cDNAs - Original: J033036E19

full reading [+] show sequence

GACATTTCAC ACTTCACATG GCAACAGAAG CAGCAGCAAC AGCAAGATGT 
CTTCTTCTTC CTCTTCTTTC TCCTCTCCAA TCTCCACACA AGCAGCAGCA 
ACTCATCTTT GCTGCTCTTC TCCTTCTCTT CTTCTTCTCT TCACTCCAGA 
GTTTGCACTG CTATGCTGCT GCTGGTTACA ATGAGCAGCA GGAAGCTGAT 
AGGGTGGCCT TCCTCCCCGG GCAGCCAAGC AGCCCGAAGG TCTCTCAGTT 
CTCAGGCTAC ATCACTGTGA ACAGGCAGAA TGGCAGGGCA CTCTTCTACT 
GGTTCTTTGA GGCCCAGGCA CTGCCCTCTC AGAAGCCTCT CCTGCTCTGG 
CTCAATGGAG GGCCAGGTTG CTCATCAGTT GGATATGGAG CTGCCTCTGA 
ACTAGGGCCC CTCAGAGTTA GCAGAAATGG AGCTGGGCTT GAGTTCAACA 
AATTTGCATG GAACAAAGAG ACCAATTTGC TGTTCTTGGA GTCCCCAGTT 
GGGGTTGGCT TCTCCTACAC CAACACATCC TCTGACCTCA CCAAACTGAA 
TGATGGTTTT GTAGCCGAGG ACGCATATAA TTTCCTGGTA AATTGGTTGG 
ACAGATTTCC ACAGTACAAA GACCATGAAT TCTATATTTC AGGAGAGAGC 
TATGCAGGTC ACTATGTGCC ACAGCTTGCA GACCTTGTCT ATGAGAGGAA 
CAAAGACAAG AAGGCCAACA GATATATCAA ACTGAAAGGG TTCATTGTTG 
GTAATCCACT TACTGATGAT CAGTACGACT CAAAAGGTCT TGTTGAATAT 
GCTTGGAGCC ACGCAGTTGT GTCAGATGGA ATTTATGAGC GCGTCAAGAA 
GGTGTGCAAC TTCAAGATCT CAAACTGGAC GAATGATTGC AATGAAGCCA 
TGAGTAGTAT TTTCAGACAA TACCAAGAGA TTGACATCTA CAATATCTAT 
GCACCCAAGT GCAATCTTGC TCAAACATCA AGAGTAGCTG CTTTCGATCA 
CGCACTCGAA GCAAGCGATC AGGAACAATT CAGTAGGAGG ATTAGGATGT 
TCTCAGGATA TGACGCGTGC TACTCATCAT ATGCTGAGAA GTACTTCAAC 
AAGCCAGACG TGCAGAAAGC ATTCCATGCA AATGCAAATG GGATGCTCCC 
TGGAAAATGG AAGGTTTGCA GTGACTCCAT TCTAAGGTCA TACAACTTTT 
CGGTGCTTTC TGTCTTGCCA ATCTATTCGA AGCTCATCAA AGCAGGACTC 
AGAATTTGGC TCTACAGTGG AGATGCCGAC GGTAGGGTCC CAGTGATCGG 
GTCAAGGTAC TGCGTGGAAG CGCTTGGGCT GCATATCAAG AGGGACTGGC 
AACCTTGGTA CCTGAACAGA CAGGTTGCAG GAAGATTTGT GGAGTACGAT 
GGCATGACCA TGGTGACGAT TAGAGGTGCT GGACATTTGG TACCCCTTAA 
TAAACCTGAA GAAGGGCTCA CTCTGATTGA CACATTTCTT CTTGGTAAAC 
AGCTCTTAAC ACACCGATGA AAGGTAAATT TAGGTTAAAA GGAAGTTGGG 
ACTATTTGTC CTAAAAGTTG CTCAATGAGT GTCAACCATT ATTGTTTGAG 
AAAGAAGTGT CAACCATTAT TCCAGGAGCC ATGGCATAGC TGAAATTATT 
CCTTTTAAGG GACAGTTTGA ATTTCAGTCT GATCCTTTTG AATGCTGCTG 
TTGCATTCTT TCACTTCTTT CTATCCAGCC TGAAGCTCTT GGTAACTTTT 
GTTGGTAAAG CATCTCAAGT CTCAAGCAAT TACATTGATA AGATTGTGCT

Gene models with high sequence identity

AT3G17180.1 [+] show detail - serine carboxypeptidase-like 33
E-value: 8e-169; Score: 590.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Peptidase S10, serine carboxypeptidase	9.6e-135
FPrintScan	Peptidase S10, serine carboxypeptidase	7.5e-27
FPrintScan	Peptidase S10, serine carboxypeptidase	7.5e-27
FPrintScan	Peptidase S10, serine carboxypeptidase	7.5e-27
FPrintScan	Peptidase S10, serine carboxypeptidase	7.5e-27
PatternScan	Peptidase S10, serine carboxypeptidase, active site	0
superfamily	alpha/beta-Hydrolases	1.4e-136
Gene3D	no description	4.4e-135
HMMPanther	SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE	6.7e-240
HMMPanther	Peptidase S10, serine carboxypeptidase	6.7e-240

See the detailed result >

AT3G17180.1

Model type: Protein coding
Short Description: serine carboxypeptidase-like 33
Computational Description: serine carboxypeptidase-like 33 (scpl33); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: shoot apex, root, flower, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 34 (TAIR:AT5G23210.1); Has 3699 Blast hits to 3642 proteins in 416 species: Archae - 0; Bacteria - 288; Metazoa - 630; Fungi - 869; Plants - 1485; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).
Link: InterPro Scan - TAIR