K09639

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09639

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09639

Determination of introduced cDNA(s)

  • J023128H24 - Rice Full-length cDNAs - Original: J023128H24

    full reading [+] show sequence

    Nucleotide sequence: J023128H24 - full reading 
    GTTTCATTCC ACCCTCTTCC GATCCCCAAC CGCCGCTGGT CCGTATCCAT 
    TCCACTCTCC TCCGACCCCT ACCGCTGCCG GAGTGCTAGG GCATCACACG 
    ATGAGTGTTG CAACTGAAGC ATGCCCTTCA CCAAAGCTAC ACACAAGACT 
    AAGGCTGTGG GAGTTTGCAG ACCGTTACGT ATTTGAACCA GTTGACGGTC 
    TTGCTGATTT GTTCCTGTCA GTTGATCGGA CAAATGGATC AATGAGTCTA 
    GTGGAAGAGT TGCCACCTCG TGGTCCCTCT ACAAATCCTA AAGTTAGAAT 
    AGTTTTTGGT GTGATTGGAG TGCTCAAACT TGCAGTTCGG TCGTACTTTC 
    TTGTGATCAC TGGCCGTGAT TGTGTTGGAT CCTACTTGGG GCATGCAATT 
    TTCAAATTGA CGGGACTAAA AGTTCTGCCA TGCAATAACT CGTTAAATAC 
    TTCTTCTGCT GAGCAGAAGA AAATGGAATC AGAATTTTCG GAACTTCTGG 
    ATGCAGCAGA GAGGACTATA GGCCTGTACT TCTCCTATGA TGTCAACTTA 
    ACACTAACTT CACAGAGGCT GCATGATCTA GGAGATCAGT TTAAGTCACT 
    TCCACTTTGG AGACAGGCAG AACCAAGATT TCTTTGGAAC GGTTACTTGT 
    TGGAGCCTCT AATTGAGAAC AAACTGCACC AATACTTACT ACCAGTCATT 
    CAAGGAAGTT TTCAGAGTAT CCATGCAGAA GTTGGGTCAG AGAAGGTAAA 
    TGTGACCCTG ATTGCACGTC GGTGTACACG TAGGATAGGT ACCCGGATGT 
    GGAGGCGAGG AGCTGATCCA GAGGGTTATG CTGCAAATTT TGTTGAATCA 
    GAGCAGATAA TGCAATCGAA AGAATTTACA GCATCATATG TGCAAGTTCG 
    AGGTTCTATG CCTTTTTTGT GGGAACAAAT TGTTGATTTG ACATATAAAC 
    CTAGTTTTGA TGTTGTCAGA GTAGAGGAGG CGCCTCGTGT ACTTGAACGG 
    CATTTTCATG ATTTACAAAA GAAATATGGA GCTGTCGTGG CTGTTGATCT 
    TGTCAATACA CATGGTGGCG AAGGTCGCCT GTATGAAAGA TATGCAAAAT 
    CAATTGAGCC TATCTTGAGT GAAGATATAA GATTTGTGCA TTTTGACTTC 
    CATCAAATCT GTGGTCATAT TCACTTTGAA CGCCTTTCTC AACTGTATGA 
    TCAAATTGAG GATTATCTTA AGAAGCATAG GTACTTCCTT TTAAATAGTA 
    AAGGTGAGAA AATGGAAGAG CAGACCGGAA CCGTTAGAAC AAATTGTGTC 
    GATTGTCTGG ATCGTACTAA TGTAACTCAG AGCATGATCG GG

    Gene models with high sequence identity

    1. AT3G51460.1 [+] show detail - Phosphoinositide phosphatase family protein
      E-value: 7e-162; Score: 567.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Synaptojanin, N-terminal 64.503
    HMMPfam Synaptojanin, N-terminal 8.6e-83
    HMMPanther SUPPRESSOR OF ACTIN (SAC) 1.6e-118
    HMMPanther INOSITOL 5-PHOSPHATASE 1.6e-118

    See the detailed result >

    AT3G51460.1

    Model type
    Protein coding
    Short Description
    Phosphoinositide phosphatase family protein
    Curator Summary
    Encodes RHD4 (ROOT HAIR DEFECTIVE4), a phosphatidylinositol-4-phosphate phosphatase required for root hair development.
    Computational Description
    ROOT HAIR DEFECTIVE4 (RHD4); FUNCTIONS IN: phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity, phosphatidylinositol-4-phosphate phosphatase activity; INVOLVED IN: root hair cell tip growth; LOCATED IN: plasma membrane of cell tip, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Synaptojanin, N-terminal (InterPro:IPR002013); BEST Arabidopsis thaliana protein match is: Phosphoinositide phosphatase family protein (TAIR:AT5G66020.1); Has 1757 Blast hits to 1639 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 573; Fungi - 593; Plants - 286; Viruses - 0; Other Eukaryotes - 305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR