K09648

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09648

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09648

Determination of introduced cDNA(s)

  • J023050L12 - Rice Full-length cDNAs - Original: J023050L12

    full reading [+] show sequence

    Nucleotide sequence: J023050L12 - full reading 
    GAATTTGATT GGCTCTTGAT CAGCCTCCGG ATCGTGTAGC GCAGTGGTGG 
    CTAGCACGTA GGTAGCAACA AAGCCATGGA CATGGAGCAT GAGCTCAGGG 
    GCGGCGGCGT CGGGGCGGCG GCGCATGGGC ATGGCTCCAT CTGCTTCTCC 
    GGCGGGCCGG TGCTCGTCGA CGGGCGACGC ATCCAGCAGC TGCTCCTCCA 
    CTGCGCCGCC GCGCTCGAGT CCAACGACGT GACGCTGGCG CAGCAGGCCA 
    TGTGGGTGCT CAACAACATC GCCTCCTCGC AGGGGGACCC CAGCCAGCGG 
    CTCACGTCGT GGCTGCTCCG CGCGCTCGTC GCCCGCGCGT GCCGTCTCTG 
    CGCGGCGGCG CCGGCGGGCG CCGCCGTGGA GTTTCTGGAG AGAGGCCGGG 
    CACCGCCGTG GGGGAGGGCC ATGTCGGTGA CGGAGCTCGC CGACTACGTC 
    GACCTCACCC CGTGGCACCG GTTCGGCTTC ACGGCGTCCA ACGCCGCCAT 
    CCTCCGCGCC GTGGCCGGCG CATCCGCCGT GCACGTCGTC GACCTCAGCG 
    TCACGCACTG CATGCAGTGG CCGACGCTCA TCGACGTGCT GTCCAAGCGG 
    CCCGGTGGCG CGCCGGCGAT CCGGATCACC GTGCCGTCCG TGCGCCCCGC 
    CGTCCCGCCG CTTCTCGCCG TGTCGAGCTC GGAGCTCGGA GCCCGGCTCG 
    CCATCTTCGC CAAGTCCAAA GGCGTGCAGC TGGAGTTCAA CGTCGTCGAG 
    AGCGCGACGA CGACGTCTCC GAAGAAGACG TCGACGACGC TGTGCCAAGA 
    ACTCGCGTCC GTGCTGTCCG ACCCGCCGTC GCTGGGGCTA AGGGACGGCG 
    AGGCGGTCGT CGTGAACTGC CAGAGCTGGC TCCGGCACGT CGCGCCGGAC 
    ACGAGGGACC TCTTCCTCGA CACGGTCCGG GCGCTGAACC CCTGCCTGCT 
    CACCGTCACC GACGAGGACG CCGACCTGGG CTCCCCGAGC CTCGCGTCGC 
    GCATGGCGGG CTGCTTCGAC TTCCACTGGA TCCTGCTCGA CGCGCTCGAC 
    ATGTCGGCGC CCAAGGACAG CCCGCGGCGG CTGGAGCAGG AGGCGGCCGT 
    CGGGCGGAAG ATCGAGAGCG TCATCGGCGA GGAAGACGGC GCCGAGCGCT 
    CGGAGCCCGG CGCGAGGCTC GCCGAGAGGA TGAGCCGGAA AGGGTTCGCC 
    GGCGTCGTGT TCGACGAGGA GGCGGCGGCG GAGGTGCGAC GATTGCTGAG 
    CGAGCACGCC ACGGGGTGGG GCGTGAAGCG GGAAGACGAC ATGCTGGTGC 
    TGACGTGGAA GGGGCACGCC GCCGTGTTCA CCGGCGCTTG GACGCCCAAC 
    TAGTTGAGCC TAGCTTAGCA ATCTACAGTA TACATCAAGT GATTAAAGCT 
    TAAGCTGGTG TTAGACTGTC TATTAGCTCA GAAGTGACAA CGGAGAATCA 
    ACTGAGGAGG AATTTCTGGT TGGATTTAGT GGATCGTTTT AAACTTCTAC 
    TTCCATGACA AGATATTTCA GTTGAATTCT TGATGTTTTA CTCCC

    Gene models with high sequence identity

    1. AT3G49950.1 [+] show detail - GRAS family transcription factor
      E-value: 3e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Transcription factor GRAS 39.709
    HMMPfam Transcription factor GRAS 8.4e-77

    See the detailed result >

    AT3G49950.1

    Model type
    Protein coding
    Short Description
    GRAS family transcription factor
    Computational Description
    GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G67411.1); Has 2188 Blast hits to 2164 proteins in 278 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2186; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR