K09733

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09733

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09733

Determination of introduced cDNA(s)

  • J013000D04 - Rice Full-length cDNAs - Original: J013000D04

    full reading [+] show sequence

    Nucleotide sequence: J013000D04 - full reading 
    CTCAGGGTCG TCGCCGTCGC CTCACCTTCG TCGGCGCCGG GGCCGGGCGC 
    CGCCGGCCGC CCCCACCCGA CCTACAAGGA GATGATCCTG CGGGCGCTCA 
    AGGAGCTTCC AGATCCGATC ATCTCCAGCC GCCGTGCCAT CGCCAAGTAC 
    ATCTCCGACA ACTTCTCCGG CCTCCCTTCT CACCACGACG CGCTCCTCAC 
    CGTTCACCTC CGCCGCCTCA GGTCACAGGG CCTTCTCCTC ATGTCTGGAC 
    ACTCGTACCT TCTCTCCACC TCCGCCACCG CCGCTCGAGG ACGGGGACGA 
    GGACGACCGC CCAAGAAAGC TTCCTCCTCC GCGCCGCCTC AAAAGCGCGG 
    ACCCGGCCGA CCCCGCAAGA ATACAGCCCT GTTTCCGGTT CCTGTGCTTG 
    AGGCGAAGCC TGGGCGCGGG CGACCCCGGA AGAACCCTCT CCCTGTGGCT 
    TCCTCCACCT CCTCTGCTGC TGCTGCTGCT ACGGCGTTGA GCCTGAGAGT 
    GAAGCGGGGA CCTGGGAGGC CGCGCAAGAA TGCTGCTGCT ACCCCGTTGA 
    GACTGGGAGC GAAGCGGGGA CCTGGGAGAC CGCGCAAGAA TGCCACTGCT 
    ACGCCGTTGA GCCTGGGAGT TAAGCGGGGA CCTGGGAGGC CGCGCAAGAA 
    TGCTGCTGCT GCTGCCTCTC CCGTTGCTCC GCCGCCTGCA TCTCCACTGA 
    AGCGGGGTGT TGGACGCCCA AGGAAGAACG CCACTCCTCT AGTCAAGCCT 
    GGACCTGGGA GGCCGTCTGG ATTCAAACGT GGACCAGGCC GCCCTCGCAA 
    GAATGCCACT CCTCCTGTGC TGTCAGTGCC ACCCACTGCT GCTGCTGTGT 
    TGGGAGTGAA GCGTGGCCGT GGGCGCCCTA GAAAGGATAA ACCATTGCAA 
    TCTTGGTCTG TGCTCTCTGG CGGTGCTGCA ATGACTAAGA GAGGGCCTGG 
    GAGGCCAAGA AAGAAGAGGC CACTGGAAGC TGGAGGTGTT GTGGCAGCAC 
    AGGTAGACAC TGCAGATGGA GGTGAGGCTG GAGCCGTTCA AAATGGAGGT 
    GAAGTTAGGT GTCTGCTCTC TGATGGTGCT TCTTCAATGG GGAACAGAGG 
    GCCTGGGAGT CCTAGGAAGG AGGTGCTATT GGAAAATGAA CCTACAGTTT 
    CTACATTGGT GGGAAAGAGA GGCCGTGGCC GTCCAAAAAA GGAGAAACCA 
    TCAGCAGCAA GGCCTGCTGA AACTGGAGAT GCTAAATCAA TGGGGATCAA 
    GAGAGGTCGC GGAAGACCAA GAAAGGACAG TTCCTTTCAA GCTGTGTTTG 
    CAGAAGCTGC AGGTCAGGTG TCAAGAGATG TCACAGCAGC TCAGCCCGAA 
    GGAGATGCAG ATTTACTGGC AAGGAAGGAA CCAGAGACTG CAGCTGTAGT 
    TTCGGTGGAG AACAAAGAAA CTAGGCCTGC GGATGCTGGG GGTGTTGTGG 
    TTTCTGAAGA GAAGACATCG ATTGATCCGG TGGAGGCTGG AAGTGTAATG 
    CCATGTGTTA ATGCAGAAGT TGATCGCATG AACTCTGACC TGCGCACTGC 
    TAATCCATAG TGTGGCTGGC GTCAGCACTC AGCACAGAAG GGAGGACCTG 
    GATGGCTGGC ACTACCTGCA GGTGTGAATG TGTATTCACT GATTTAGCTG 
    GAGACATACT GTGAAAACTG TTAAATGTTG CAACCAAAAT TATTACTGTC 
    ATGCTGTTAA GTAGTTTCTC AAGATCAACA TTGGAGTATG CTTTTAATGA 
    TATCCACTTC TCGGATAAAT TTTTATAATA GTCCTTAGGT AGCACATATA 
    GTTCCTTTAG GAATGACTGG ATATATCATA TATGTTGCTT TTAGTGCACC 
    CAGTGGTGAT GAGATGCATC AATGTTTACT TCCAATTTGA ACATAACAGT 
    CCGGATCCG

    Gene models with high sequence identity

    1. AT3G18035.1 [+] show detail - winged-helix DNA-binding transcription factor family protein
      E-value: 1e-14; Score: 79.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan A.T hook-like 3.2e-11
    FPrintScan A.T hook-like 3.2e-11
    FPrintScan A.T hook-like 3.2e-11
    FPrintScan High mobility group, HMG-I/HMG-Y 5.9e-06
    FPrintScan High mobility group, HMG-I/HMG-Y 5.9e-06
    FPrintScan High mobility group, HMG-I/HMG-Y 5.9e-06
    superfamily "Winged helix" DNA-binding domain 3e-17
    HMMSmart Histone H1/H5 3e-21
    HMMSmart AT hook, DNA-binding motif 0.96
    HMMSmart AT hook, DNA-binding motif 2.3
    HMMSmart AT hook, DNA-binding motif 48
    HMMSmart AT hook, DNA-binding motif 2.1
    HMMSmart AT hook, DNA-binding motif 1.1
    HMMSmart AT hook, DNA-binding motif 2.1
    HMMSmart AT hook, DNA-binding motif 0.8
    HMMSmart AT hook, DNA-binding motif 2.4
    HMMSmart AT hook, DNA-binding motif 0.56
    HMMSmart AT hook, DNA-binding motif 20
    HMMSmart AT hook, DNA-binding motif 2.9
    HMMSmart AT hook, DNA-binding motif 1.2
    HMMPanther HISTONE H1/H5 0.00014
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 2.6e-08
    HMMPfam Histone H1/H5 2.9e-08

    See the detailed result >

    AT3G18035.1

    Model type
    Protein coding
    Short Description
    winged-helix DNA-binding transcription factor family protein
    Curator Summary
    A linker histone like protein
    Computational Description
    HON4; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), A.T hook-like (InterPro:IPR020478), AT hook, DNA-binding motif (InterPro:IPR017956), Histone H1/H5 (InterPro:IPR005818); BEST Arabidopsis thaliana protein match is: high mobility group A5 (TAIR:AT1G48620.1); Has 2301 Blast hits to 2184 proteins in 377 species: Archae - 0; Bacteria - 351; Metazoa - 868; Fungi - 344; Plants - 528; Viruses - 17; Other Eukaryotes - 193 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR