K09750

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09750

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09750

Determination of introduced cDNA(s)

  • J033086M16 - Rice Full-length cDNAs - Original: J033086M16

    full reading [+] show sequence

    Nucleotide sequence: J033086M16 - full reading 
    GGCCGATTCT AGCGATGGCG TCGCGGGGCG GCGGCGCGCG GCGCACGCGG 
    CCGAACGTGC TGGTGACGGG GACGCCGGGC ACGGGGAAGA CGACGACGTG 
    CTCACTCCTC GCCGACGCGG TGGACCTCCG CCACATCAAC ATCGGGGACC 
    TCGTCCGCGA GAAGAGCCTC CATGACGGCT GGGACGAGGA GCTCGAGTGC 
    CACATCATCA ACGAGGACCT GGTTTGCGAT GAGCTTGAGG ACGTGATGGA 
    AGAAGGTGGT ATACTAGTAG ATTACCATGG ATGTGATTTC TTTCCAGAAC 
    GTTGGTTTGA CCTTGTAGTT GTGCTCCAAA CAGATAACTC AATTCTGCAT 
    GATCGCTTGA CTAGCAGAGG TTATATGGGT GCCAAGCTCA CAAACAACAT 
    AGAATGTGAA ATTTTCCAGA TGCTCCTGGA GGAGGCAAGG GAGAGCTACA 
    AAGAGGAGAT AGTGATGCCC TTGCGAAGTG ACAATGTGGA GGATATCAGT 
    AGGAATGTGG GCACACTGAC AGAATGGATA AACAACTGGA GACCATCCCG 
    GAGCTGAGCT GTTTCCTCTC TTCCTCTCTG GTAATGCTTA TGCCTGGTGA 
    AAAAATGTTT TTTTTTCTAT GGTGAATTTT GAATATTGAG TTAGATCGTG 
    CAGACATTGT AAGCCTTTTT ACGTATGCAT GCCCAACCTT GGATCTCAGC 
    ACGCAATACC TTGTGCTAAA CGGGTTATGT GATGGGGGCA TGCTGAATGT 
    AAATTAGTAG TTTCATAGGG AATGTCTGGC TCCAGTTTGT TTCTCTATTT 
    CAAACTGAAA TGTTATGTGA CATCATTACA TGTTTGAACC TGCTAATGGG 
    ATGTACTTAA AGTGATTGGC AAAAGTGCTG ATTTATTTTG CTGCT

    Gene models with high sequence identity

    1. AT5G60340.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
      E-value: 5e-61; Score: 231.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily P-loop containing nucleoside triphosphate hyd 6.2e-33
    HMMPfam Adenylate kinase 1.2e-05
    Gene3D no description 1.9e-60
    HMMPanther POS9-ACTIVATING FACTOR FAP7-RELATED 1.3e-73

    See the detailed result >

    AT5G60340.1

    Model type
    Protein coding
    Short Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein
    Computational Description
    P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: oxidoreductase activity, ATP binding; INVOLVED IN: metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, C globular stage, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR