K09804

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	dark green (PATO:0001249) (Rosette leaf::Color::dark) present in fewer numbers in organism (PATO:0001997) (Rosette leaf::Number::few) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09804

Determination of introduced cDNA(s)

J033132F12 - Rice Full-length cDNAs - Original: J033132F12

full reading [+] show sequence

GACCTTCCGC CTCCGCAAGA AAGAAAGAAA AAGAGGGGAA GCAAAGCGCA 
GAGGCGGCCG TCGCAGCAGC AACACAAGTC AGGGGAGGAG AGAGAGGCCG 
CGCCGCCGCA GATCTGTGGC CGCGTTAGGG TTTCTTCGCC GGAATCGAGC 
GAGGAAGTAG GAGGGAGAGG AGGAGGAGGA GGAGGGCGAC GAGTAGGAGG 
CGGCGGCGGC GGAGATGGAC GTGGTGAAGG CGGCGCAGCT CTCGGGGCGG 
ACGCTGGAGA AGGTGGTGGT GCACCCGCTG GTGCTGCTCA GCATCGTCGA 
CCACTACAAC CGCGTCGCCC GCGACACCCG CAAGCGCGTC GTCGGCGTGC 
TCCTCGGCAC CTCCTCCCGC GGTTCCGTCG ATGTCACCAA CTCCTACGCC 
GTGCCGTTTG AAGAGGATGA CAAGGATCCG AGGATCTGGT TCCTCGATCA 
TAATTACCAC GAATCGATGT TTTCCATGTT CAAGAGGATC AACGCCAAGG 
AGCATGTTGT TGGCTGGTAC AGCACCGGTC CAAAACTCAG GGAGAACGAC 
TTGGATATAC ACGCACTATT CAATAACTAT GTTCCTAACC CTGTCCTGGT 
GATTATTGAT GTTCAACCCA AGGAGTTAGG AATACCCACC AAAGCATACT 
ATGCTGCGGA GGAGGTTAAA GAGAATGCTA CTCAAAAAAG TCAAAAGGTG 
TTTGTTCATG TTCCTTCAGA AATAGCTGCC CACGAGGTTG AGGAAATCGG 
AGTTGAGCAT CTTCTGAGGG ATGTCAAGGA CACAACAATA AGCACGCTTG 
CGACAGAGGT AACCAGCAAG CTTGCAGCCT TGAAAGGACT GGACGCAAGG 
CTCAGGGAGA TCCGTGGGTA CTTAGATCTT GTAATTGAAG GGAAGCTCCC 
ACTGAATCAT GAGATTTTGT ACCACTTGCA GGATGTGTTT AATCTGCTCC 
CCAATCTCAA TGTAAACGAG CTTATTAAAG CCTTTGCAGT TAAAACAAAC 
GATATGATGT TGGTCATATA CTTGTCTTCT CTTATCCGGA GTGTCATCGC 
ACTCCATAAC TTGATCAATA ACAAGATGCT AAACAAGGAG CATGAGAAAG 
CCGAGGATTC GAAGCCAACC GCCATACCTA GTGCTGCTGG GAGCTGAATG 
TGCTTTATTT GCCTTAGATT TTGGACCCAG TGGAAGCCAA AAGAATTGTG 
ACATGTTAGC ATGATGGCGT TTGAACCAAT TGTCTTTGAC CTTGGTTTTA 
CACTTTCGAT GTTTATTTCA TGTACGATAA GGTCAACGGC AAACTTTACA 
TTCTGTGAGC TTAGGTCATA CTACCTCTTG AGCTTTCATC TTGATCTTAT 
ATACAATGTT TCATGGGGTG CATCATGTTT TGTGATGCGG ATTGTCGTAC 
GATTAACTTC TAGTAAATGT TTACTTGACG C

Gene models with high sequence identity

AT5G05780.1 [+] show detail - RP non-ATPase subunit 8A
E-value: 8e-161; Score: 563.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	26S PROTEASOME REGULATORY SUBUNIT 7, PSD7	1.2e-173
HMMPanther	EIF3F-RELATED	1.2e-173
HMMPfam	Mov34/MPN/PAD-1	9.6e-30
HMMSmart	Mov34/MPN/PAD-1	6.9e-29

See the detailed result >

AT5G05780.1

Model type: Protein coding
Short Description: RP non-ATPase subunit 8A
Curator Summary: Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity.
Computational Description: RP non-ATPase subunit 8A (RPN8A); CONTAINS InterPro DOMAIN/s: Mov34/MPN/PAD-1 (InterPro:IPR000555); BEST Arabidopsis thaliana protein match is: Mov34/MPN/PAD-1 family protein (TAIR:AT3G11270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR