K09805

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09805

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09805

Determination of introduced cDNA(s)

  • J033024B20 - Rice Full-length cDNAs - Original: J033024B20

    full reading [+] show sequence

    Nucleotide sequence: J033024B20 - full reading 
    GGAGAAGTCC AGAACCCTAG TCTGCCCCAG CCCGGCTCGT CGCAGGCAAG 
    CATCGCGGCG GCGCGGGCAC ACCTCCGCCG ACACAGGCGC CGCTCCTCCT 
    CCTCCCTTCT CCCCTCTCGT TTCTTGCGGC CGAGGAGTCG CCCCCAACTC 
    AGGTGAAGTC ACGATGAGCA TCTCGGGCGA GGTCCCCGCC GGCGAAGGCT 
    CTGATGGAGA GGAGGTGTTC ATCAATGAGG AGGACATCAT ACACGAGATA 
    CCCATCGACG AGGAAGATCT CCCTGACCGG GATGATGATG AGGATGACGA 
    TGGGATGGGT GATATGCAAG AGGATGATTC CCAATATGCA TTTCGTGCTC 
    ATACAGACGA GATATTCGCT GTGGCATGCA GTCCTACAGA TGCATCACTT 
    GTGGCTTCTG GAGGGAAAGA CGATAGAGGA TTCCTGTGGA AGATTGGATC 
    AGCAGAGGAT GTTTTGGAGC TGGCCGGGCA CACAGATACT GTCTGCACGG 
    TTGCTTTCAG TTCAGATGGG AATCTTTTGG CTTCTGGAAG TTTTGATGGA 
    CGCATAAATG TGTGGAATAC AGCTACACGA ACACTTCAGG GAACCCTTGA 
    GGGTTCTGGA TCTGGCTTCG AGTGGCTTAA ATGGCATCCA CGAGGGCATT 
    TGATAATTGC AGGATCAGAA GATTGTAATT TGTGGATGTG GAATGCTGAC 
    CATAATGCCA TTCTGAATAC CTTTGCTGGC CATAGTAGCA CAGTGACATG 
    TGGTGATTTT ACTCCAGATG GTAAACTTAT CTGTACTGGA TCAGATGATG 
    CATCATTGAG AATATGGGAC CCAAGAACTG CACAAAGCAG ACATGTTGTT 
    CGAGGCCATG GCTATCATAC GGATGGATTA ACATGCTTAT CAGTTACTTC 
    GGATTCCCAA ACAATTGTTA GTGGTTCAAA GGATAATTCT GTGTGTGTTG 
    TGAACATAAA CTCAGGCCAG GTTGTTGGCT CACTGGACGG CCACACTGGC 
    TCTATTGAGT GTGTCGGCAT CTCACCAAGT TACAATTGGG TGGCTACAGG 
    GAGCATGGAT CAGAAGCTCA TCATCTGGGA CCTTGGTCGC CAATCGATCC 
    GATGCACTTG CAACCACGAT GAGGGGGTGA CATCCCTGGC ATGGCTGGGC 
    CCGTCCAGGT TCGTGGCGTC GGGGTGCATC GACGGCATGG TGCGAATCTG 
    GGACAGCCTC TCCGGGGAGT GCGTGAGGGC CTTCGCCGGC CACGGTGACG 
    TCGTGCAGTC CCTCGCCGTC TCTGCTGATG GCAACTCCAT CGTCTCCGTG 
    TCCACGGATG GCTCTGCCCT CATCTTCGAC ATTTCCATGT TCAAGTGAAA 
    CCATAGTAGC AGTAGTTACC AATACATGAT GAAGCCAACG CAAAACTGTA 
    CAATGGTCTC CTCAGCCACT TTGGTTATAG GCCAGGGGAT TGAGATTTTA 
    TACATGGAGC CACTGCGAGT TGTACAATTA AACACCCTCG TCTAGGGGAT 
    TACAACTGCA AGTCGAATCA ATTTTTGTGT GAGCATTTGG CATGGATTAA 
    TAGCATATTT TCCTGATGTT TTGCAGCATA CTCTTTTGTT TTCAATGCCA 
    ATGGTGTGTG CAATT

    Gene models with high sequence identity

    1. AT1G71840.1 [+] show detail - transducin family protein / WD-40 repeat family protein
      E-value: 7e-119; Score: 424.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam WD40 repeat, subgroup 0.0012
    HMMPfam WD40 repeat, subgroup 5.2e-11
    HMMPfam WD40 repeat, subgroup 0.00019
    HMMPfam WD40 repeat, subgroup 6.8e-10
    HMMPfam WD40 repeat, subgroup 0.00026
    HMMPfam WD40 repeat, subgroup 1.2e-09
    HMMPfam WD40 repeat, subgroup 9.7e-08
    HMMPfam WD40 repeat, subgroup 3e-05
    Gene3D WD40/YVTN repeat-like-containing domain 2.4e-18
    Gene3D WD40/YVTN repeat-like-containing domain 1.6e-62
    ProfileScan WD40 repeat 2 9.94
    ProfileScan WD40 repeat 2 16.323
    ProfileScan WD40 repeat 2 9.339
    ProfileScan WD40 repeat 2 16.223
    ProfileScan WD40 repeat 2 8.938
    ProfileScan WD40 repeat 2 13.249
    ProfileScan WD40 repeat 2 12.681
    ProfileScan WD40 repeat 2 10.776
    ProfileScan WD40-repeat-containing domain 66.281
    HMMSmart WD40 repeat 0.0045
    HMMSmart WD40 repeat 3e-10
    HMMSmart WD40 repeat 0.0012
    HMMSmart WD40 repeat 2.3e-09
    HMMSmart WD40 repeat 0.0059
    HMMSmart WD40 repeat 1.1e-08
    HMMSmart WD40 repeat 9e-07
    HMMSmart WD40 repeat 7.2e-07
    FPrintScan G-protein beta WD-40 repeat, region 3.7e-06
    FPrintScan G-protein beta WD-40 repeat, region 3.7e-06
    FPrintScan G-protein beta WD-40 repeat, region 3.7e-06
    HMMPanther ANGIO-ASSOCIATED, MIGRATORY CELL PROTEIN-RELA 0
    HMMPanther FAMILY NOT NAMED 0
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    PatternScan WD40 repeat, conserved site 0
    superfamily WD40 repeat-like-containing domain 7e-87

    See the detailed result >

    AT1G71840.1

    Model type
    Protein coding
    Short Description
    transducin family protein / WD-40 repeat family protein
    Computational Description
    transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), Quinoprotein amine dehydrogenase, beta chain-like (InterPro:IPR011044), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT4G02730.1); Has 91198 Blast hits to 35247 proteins in 911 species: Archae - 70; Bacteria - 10066; Metazoa - 38021; Fungi - 19388; Plants - 11732; Viruses - 0; Other Eukaryotes - 11921 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR