K09808

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09808

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09808

Determination of introduced cDNA(s)

  • J023069E05 - Rice Full-length cDNAs - Original: J023069E05

    full reading [+] show sequence

    Nucleotide sequence: J023069E05 - full reading 
    GACCTCGCTC ACCTCACTGC CCTCGCTTTC GTCCCCCGCA TCCGCACCTC 
    GTCCTTCGCC AATTCGCCAT GCCGTCGCTC GCCACGGCCG CGGCCGCGGG 
    AGCGGGAGCG CCTCTCCGCC GCGGCCCGTG CGCACCACGC CGCCAATCCG 
    CGCACGCCTC CTCCTCCTCC TCCTCCTCCC TCCCCTCCCC CGCGCTCGCC 
    ACGTCCACGC GCTTCGCCGC CACCGCCCCC ATCCTGCGGC TCGTCCAACG 
    AAGGCCAAGA GCGCCTCTGA CGGCGGCAAG AGCGGCGAGC CCCGACGCCG 
    CCACGGGGGC GCGATCGCCC TCCTCCGGCG GCCAGATGCT GGTGTTCGTG 
    CCGCCGCACC CGCTGATAAA GCACTGGGTC TCCGTCCTGC GCAACGAGCA 
    GACGCCCTGC GCCATCTTCA AGAGTGCCAT GGCGGAGCTT GGTCGGTTGC 
    TTATATATGA AGCTTCCAGA GATTGGCTGC CAACAATCAC AGGAGAGATC 
    CAAACACCTG TAGCTGTTTC AAGTGTTGAA TTTATTGACC CAAGAGAGCC 
    TGTCATGGTT GTTCCGATAC TAAGAGCTGG TCTTGCTATG GCTGAAAATG 
    CTTCATCAGT TCTACCAGCC ACCAAGACTT ATCACCTTGG CCTGCGTAGG 
    GATGAAGAAA CACTTCAACC TTCGATATAT CTGAACAACT TGCCAGACAA 
    GATTCCAGAG GGGACTCGTG TGCTAGTTGT TGATCCAATG CTGGCCACTG 
    GTGGGACAAT TGTTGCTGCT ATTGACTTGT TGGTTGAACG TGGAGTTACA 
    AGCAAGCAGA TTAAAGTCGT TTCTGCTGTT GCAGCGCCTC CTGCGCTTCA 
    AAAGCTCAGC AACAAATTCC CTGGGCTTCA TGTGTACACG GGAACAATTG 
    ATTCTGAAGT TGATGAGAGA GGGTTCATAG TTCCGGGGTT GGGAGATGCC 
    GGCGATAGAA GCTTCGCGAC TTAACTATGC TAATTATCGC AGCTGCTGTT 
    CTACCTCCAC GAGAGGGATT GGCGTAAGCT GAAATTTCCG AGGATTCGAG 
    CGCTTTTGAC TTGGGAGTCA GGAACGGTCG AGTTCACGTT CACCTGTAGA 
    TTGCCTCGTT CGAGATTCTC CCTTCGGAAC TTATCGTTTT GTAATTATCC 
    ATTTTGTGTT GTCATGTTGA ATATAGGATT AGTTCACGTC CATCCACGTT 
    TACAATTTGT TGGGAATATG CATGTTTAAT GTTTTCAATT ATATCTTACA 
    GATTTCTTGA TACTCCATGG GAAAAAATGT TGACGATGCC TTTTCCAATC 
    AGAGTAATAA AGCAATGTGC AAGGCT

    Gene models with high sequence identity

    1. AT3G53900.2 [+] show detail - uracil phosphoribosyltransferase
      E-value: 1e-91; Score: 333.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther URACIL PHOSPHORIBOSYLTRANSFERASE 9.9e-92
    HMMPanther URIDINE KINASE RELATED 9.9e-92
    HMMPfam Phosphoribosyltransferase 2.9e-13
    Gene3D no description 7.8e-67
    HMMTigr Uracil phosphoribosyl transferase 3.1e-92
    superfamily PRTase-like 2.3e-63

    See the detailed result >

    AT3G53900.2

    Model type
    Protein coding
    Short Description
    uracil phosphoribosyltransferase
    Curator Summary
    Encodes UPP, a plastidial uracil phosphoribosyltransferase (UPRT) involved in uracil salvage. Loss-of-function mutation causes dramatic growth retardation, a pale-green to albino phenotype, abnormal root morphology and chloroplastic disorders.
    Computational Description
    uracil phosphoribosyltransferase (UPP); FUNCTIONS IN: uracil phosphoribosyltransferase activity; INVOLVED IN: cellular response to phosphate starvation, developmental process, nucleoside metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Uracil phosphoribosyl transferase (InterPro:IPR005765); BEST Arabidopsis thaliana protein match is: uridine kinase-like 5 (TAIR:AT3G27440.1); Has 6282 Blast hits to 6282 proteins in 2386 species: Archae - 194; Bacteria - 4411; Metazoa - 238; Fungi - 342; Plants - 200; Viruses - 0; Other Eukaryotes - 897 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR