K09819

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09819

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09819

Determination of introduced cDNA(s)

  • J013036G07 - Rice Full-length cDNAs - Original: J013036G07

    full reading [+] show sequence

    Nucleotide sequence: J013036G07 - full reading 
    GGCTTGCTTC CACAGTTCCA CTTGCATCTT GGAGCCATTC ACACGCTCCC 
    ACCATGCATC CCAAGTCATC ACTGCTGTTC TTCCTCATGA TCGGAGCATT 
    GCTCACCAAT GCCATGGCAA ACCATGCACC GGCTCCAGCC GCCGTCAACT 
    GCGTGCCACG AGAGAGGGAA GCCCTGCTGG CCTTCAAGCG AGGCATCACT 
    GGCGACCCCG CAGGGCGCCT CGCCTCGTGG AAGGAAGACG ACCATGACTG 
    CTGCCGGTGG AGGGGCGTTA GATTATAGCC CTTTGGAGTT CAACGCGGTA 
    GCTTTGGTCG GCCGGATAAC GTCTTCTTTG CTTTCTCTGG AGCATCTAGA 
    GCACCTTGAC CTCAGCAACA ACAACCTCAC GGGGCCGGAT GGCCGTTTCC 
    CGGTGTTTGT GGCCTCCCTT CGCAACCTAC AATATCTTGA TCTCTCTGGT 
    TTGGGATTCA CTGGTATGGT GCCATATCAG CTTGGTAACC TTTCAAAGCT 
    GGAATTTCTT GACCTTTCGG GAACAGGTAT GCAATCAGCA GATATATCAT 
    GGCTAACACG TCTACAATGG TTGAAGTACC TTTACTTGTC ATCAGTAAAT 
    CTTAGCGCGA TATCTGATTG GGCTCATGTA GTAAACAAGA TCCCATCACT 
    AACGGTGCTT TCTCTCTCTG GTTGCTCACT TACACGTGTA GACCACTCGC 
    TCAAACACGT AAACCTCACT AGACTTGAGA AGCTCCATCT CTCTGGCAAC 
    GATTTTAGCC ACCCTTTGTC ATCTTGCTGG TTTTGGATCT TGAAAACCCT 
    CATCTACCTC GACCTTGAAT CAACCGGTTT ATATGGTCGA TTTCCAAATG 
    CAATAACCAA CATGACGTCC CTCCAGGTCT TGGATTTTTC AAGAAACAAT 
    AATGCGGGTA TTTTGGAACC AATTCTGCTA AGGAACCTTT GCAACTTAGA 
    AAGTCTGAAC CTTCAATTGG GCCTCTTGTC TGGTAACATG ACAGAGCTGC 
    TAGAGAGTTT GAGTCATTGC TCACCAAACA AATTGCGGAA ATTATATTTG 
    TCCAACAACA ATATTACGGG AACTCTACCA GCTCAGAGTA TGGGCCAATT 
    TACCAGCTTA GCCAATATTG GTTTCTCTTT CAACCAGCTC ACAGGGCACG 
    TGCCTCCTGA GATTGGTAAA CTAGCTAGTT TGACTCACCT TGACCTAAGT 
    GAAAATAAAT TAACAGGAAC CATCACAGAT GAACACTTCG GTGGTCTAGT 
    GAGCTTAACA TACATTGATT TATCTTACAA CAAACTCAAG ATTGTTATAG 
    ACCCTGAATG GTTACCACCA TTTAGGCTTG AAACTGCGTA TTTTGCATCT 
    TGTCAAATGG GTCCTCTGTT TCCTGCCTGG CTCCGGTGGT CATCCGACAT 
    TGATATGATT GATATTTCAA GCGCTAATAT AATAGACGAG TTTCCAGATT 
    GGGTCTCTAC AGCATTTTCA AAGGCCATAT ATTTGGACAT GTCTAATAAC 
    AAAATCAGCG GTAACCTGCC AAAAAATATG AAAATCATGT CTCTGGAAGA 
    ACTCTATCTA AATTCAAACA GAATAATCGG TGAAGTACCA ACGTTGCCGA 
    CAAACCTCAC CTATTTGGAC ATCTCAAATA ACATACTATC AGGGCTTGTC 
    GCATCAAACT TCGGAGCGCC AAGACTAGAT ACTATGAATC TATCCTCAAA 
    CAGCATCCAA GGCCAGATTC CAAGTTCGAT TTGCAGGTTG AAATATTTGA 
    GCACCTTGGA TTTATCCAAC AATCTTTTGA ACGGGAAACT TCCTCGATGC 
    ATTGGGATGA GAAATCTCCA GAAGCTTCTA CTAAGTAATA ATAACTTATC 
    TGGCACATTC CCATCTTTAC TGCAAGGCTG CACACTGCTA CGTTATATAG 
    ACCTATCATG GAATAGGTTT TATGGAAGAT TACCGAGTTG GATTGGAGAC 
    TTCCAAGAAT TAGTTTCTCT ACAACTGAGG AACAATACTT TTTCTTGGTA 
    ATGTTCTTTC ACTGAACATA GCAAGAATTA CTCTATGTAT ATGTTAGGTG 
    CCTCAAGGAA AGTAGTCGTA TTCAGAGGTA CAGCAGCGTT GATGAGAATG 
    CCGTGCCATG TTCAATGATG AGGATCAAAC TGCTTATCTG GTTTGGGCCT 
    CCTGAAAATA CTTGCATCAA AGCAACTATA TAATAAAGTT AGAGGTCTGT 
    CAGTAACCTT CTGC

    Gene models with high sequence identity

    1. AT2G34930.1 [+] show detail - disease resistance family protein / LRR family protein
      E-value: 7e-63; Score: 239.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Toll-like receptor, leucine rich repeat-containing 4.1e-06
    FPrintScan Toll-like receptor, leucine rich repeat-containing 4.1e-06
    HMMSmart no description 120
    HMMSmart Leucine-rich repeat, typical subtype 55
    HMMSmart Leucine-rich repeat, typical subtype 150
    HMMSmart Leucine-rich repeat, typical subtype 81
    HMMSmart no description 48
    HMMSmart Leucine-rich repeat, typical subtype 16
    HMMSmart no description 520
    HMMSmart Leucine-rich repeat, typical subtype 220
    HMMSmart no description 470
    HMMSmart no description 19
    HMMSmart Leucine-rich repeat, typical subtype 47
    HMMPfam Leucine-rich repeat 0.03
    HMMPfam Leucine-rich repeat 0.32
    HMMPfam Leucine-rich repeat 0.032
    HMMPfam Leucine-rich repeat 0.019
    HMMPfam Leucine-rich repeat 0.69
    HMMPfam Leucine-rich repeat 0.25
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 7e-14
    Gene3D no description 2.3e-29
    Gene3D no description 3.1e-34
    Gene3D no description 3.3e-10
    superfamily L domain-like 6.1e-55
    superfamily RNI-like 1.4e-52
    HMMPanther LRR RECEPTOR-LIKE KINASE 1.2e-56
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.2e-56

    See the detailed result >

    AT2G34930.1

    Model type
    Protein coding
    Short Description
    disease resistance family protein / LRR family protein
    Computational Description
    disease resistance family protein / LRR family protein; INVOLVED IN: signal transduction, defense response to fungus, defense response; LOCATED IN: cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 135121 Blast hits to 32840 proteins in 1181 species: Archae - 56; Bacteria - 8201; Metazoa - 34800; Fungi - 1569; Plants - 79859; Viruses - 2; Other Eukaryotes - 10634 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR