K09820

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09820

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09820

Determination of introduced cDNA(s)

  • J023091E23 - Rice Full-length cDNAs - Original: J023091E23

    full reading [+] show sequence

    Nucleotide sequence: J023091E23 - full reading
    GATAGCATTT GCGTCCTCGC TCGATCGATA TCGGCCTCTA CCACCACTCT 
    CTCGAAATAT TAGATATATA GTTGCAATTT GTATCATTAA CATGTCGATC
    GAAGCAGGTG TTACGGCGAC TGCACCCACC GTGTCGGCCA TCGTCCTGAC
    GGCGACGGTG GGGTGCCACC TTCTCAAGAT CAGCGGCTAC TCGCAGACAA
    GGCTGGTCGA TAATGGCGAA CGCGTCGAGT CGGCCAAGTT CAAGGCGGCC
    GGTCACACCT GGCGCATTGT CTTCTACCCC AACGGCAAGT ACAGCATGGA
    CCATGGCGCC TTCTCCTTCT ACCTCAAGCT CATCGACAGG TCCAAGGGCG
    TGGATGCCGA GATCCAATTC AGCCTGCTGC CGCGGCATGG CGCGGACAGC
    GGTACGCTCC CGTACAGCAA ACCGGAGATC ATGCACACGT TCGGGAGCGC
    GCGCCGCAAC AGCAAGTGCG GGTTCAACTG GTTCATCAGC AGGGACGAGA
    TGGAGACGCT GCAGAACAAG TATGTCGGGG AGGATGACGA CTCCATCATC
    CTCTGTTGCG ACATCAAGGT GGTGAACAAA CCGGCCATCC ATCGCATTGG
    CCTGAACGAC CTAGGGGTGT TTTGCCCCTG CGATGACGAC ACCTGCAAGC
    GCCTCCACAA GAGGTCGCTG CAGGCAGCGT CTGATATAGC TATGGAGTCT
    CAGCCATGTC TCGGTATCAA GGGGGGGTTC AAAAGGCTTT TCTCATACTT
    TCTAGCCTAA TTAGCACAGT TTAATTTGTT CCAAGTCATG CCTTAGTACG
    TACGTACATC TTGATAACGC ATGGTGTCCA TGTTCGGCGA ATCAATTTCT
    TTTAGCAGTT AATTCATTTA TTAGGCTTTT ATAAATTCAC TGGAATGGTA
    TTATTATATG TATTAGCTAG TAATTTATTT TCATTAATAA TAAAGATGTT
    TGTTTCCAGA AAGAAAAGAG TACTAAATG

    Gene models with high sequence identity

    1. AT3G03740.1 [+] show detail - BTB-POZ and MATH domain 4
      E-value: 0.000000008; Score: 58.20

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MATH 13.436
    HMMPfam MATH 0.0000017
    superfamily TRAF-like 1.6e-18

    See the detailed result >

    AT3G03740.1

    Model type
    Protein coding
    Short Description
    BTB-POZ and MATH domain 4
    Computational Description
    BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR