K09834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09834

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09834

Determination of introduced cDNA(s)

  • J013084O08 - Rice Full-length cDNAs - Original: J013084O08

    full reading [+] show sequence

    Nucleotide sequence: J013084O08 - full reading
    GTATCCATCC CCAAATCCGA ACCCTCCCCC CCCCCCCACT CCTCTGCGCC 
    TCCCTCCTCC GCGGCCTCCG CCATGGCCTC CCTCGCCTCC GCCACTACGC
    CCACGTCGAC TGCCCCGGCC ACGCCGACTA CGTCAAGAAC ATGATTACCG
    GCGCCGCGCA GATGGACGGC GCCATCCTCG TCGTCTCCGG CGCCGACGGG
    CCCATGCCGC AGACCAAGGA GCACATCCTG CTCGCCAAGC AGGTCGGTGT
    CCCCAAGATT GTTGTCTTCC TCAACAAGAA GGACCAGGTC GACGACGAGG
    AGCTGCTCCA GCTCGTCGAG CTCGAGGTCC GCGAATTGCT CTCCTCCTAC
    GAGTACGATG GCGACGAAGT GCCCATCGTC GCTGGCTCCG CGCTCAAGGC
    GCTCGAGAAC CTCATGGCCA ACCCTGCTTC CATCACGCCA CACACCAAGT
    TTGATGCGGT TGTGTATGTC CTGAAGAAGG ACGAGGGTGG ACGGCACTCA
    CCGTTTTTCC CTGGTTACCG CCCTCAGTTC TACATGCGGA CTACCGATGT
    GACGGGGAAT GTCACAAAGA TTATGAACGA CAAGGACGAG GAGGCGAAGA
    TGTGCATGCC TGGTGACCGT GTCAAGATGG TTGTGGAGCT CATCCAGCCC
    GTCGCTTGTG AGCAGGGAAT GAGGTTTGCC ATCCGTGAGG GTGGAAAGAC
    CGTCGGTGCC GGCGTCATCA ATACGATCTT GAAGTAAACT GGATGGAGCA
    TATCCACCGT GAGAATTTTC CTTGTTTACT CTTTGCGAAA TGCTCTGTAG
    TTGTTATTAC GCGTTGAGTT TTAGGGGTTG CTCATGTGAA ATTGTAGTAT
    GGCACTTTTC TCTTCAAGTG AATTTGCATA CTTTGTGATA TTCACGACG

    Gene models with high sequence identity

    1. AT4G20360.1 [+] show detail - RAB GTPase homolog E1B
      E-value: 4e-50; Score: 195.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Translation elongation factor EFTu/EF1A, bacterial/organelle 7.9e-102
    HMMPanther TRANSLATION FACTOR 7.9e-102
    superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 6.8e-35
    superfamily P-loop containing nucleoside triphosphate hyd 3.9e-31
    FPrintScan Protein synthesis factor, GTP-binding 1e-11
    FPrintScan Protein synthesis factor, GTP-binding 1e-11
    FPrintScan Protein synthesis factor, GTP-binding 1e-11
    Gene3D no description 9.4e-30
    Gene3D no description 3.7e-36
    HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 2.7e-39
    HMMPfam Protein synthesis factor, GTP-binding 9.4e-37

    See the detailed result >

    AT4G20360.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog E1B
    Computational Description
    RAB GTPase homolog E1B (RABE1b); FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT4G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR