K09834

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09834

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09834

Determination of introduced cDNA(s)

  • J013084O08 - Rice Full-length cDNAs - Original: J013084O08

    full reading [+] show sequence

    Nucleotide sequence: J013084O08 - full reading 
    GTATCCATCC CCAAATCCGA ACCCTCCCCC CCCCCCCACT CCTCTGCGCC 
    TCCCTCCTCC GCGGCCTCCG CCATGGCCTC CCTCGCCTCC GCCACTACGC 
    CCACGTCGAC TGCCCCGGCC ACGCCGACTA CGTCAAGAAC ATGATTACCG 
    GCGCCGCGCA GATGGACGGC GCCATCCTCG TCGTCTCCGG CGCCGACGGG 
    CCCATGCCGC AGACCAAGGA GCACATCCTG CTCGCCAAGC AGGTCGGTGT 
    CCCCAAGATT GTTGTCTTCC TCAACAAGAA GGACCAGGTC GACGACGAGG 
    AGCTGCTCCA GCTCGTCGAG CTCGAGGTCC GCGAATTGCT CTCCTCCTAC 
    GAGTACGATG GCGACGAAGT GCCCATCGTC GCTGGCTCCG CGCTCAAGGC 
    GCTCGAGAAC CTCATGGCCA ACCCTGCTTC CATCACGCCA CACACCAAGT 
    TTGATGCGGT TGTGTATGTC CTGAAGAAGG ACGAGGGTGG ACGGCACTCA 
    CCGTTTTTCC CTGGTTACCG CCCTCAGTTC TACATGCGGA CTACCGATGT 
    GACGGGGAAT GTCACAAAGA TTATGAACGA CAAGGACGAG GAGGCGAAGA 
    TGTGCATGCC TGGTGACCGT GTCAAGATGG TTGTGGAGCT CATCCAGCCC 
    GTCGCTTGTG AGCAGGGAAT GAGGTTTGCC ATCCGTGAGG GTGGAAAGAC 
    CGTCGGTGCC GGCGTCATCA ATACGATCTT GAAGTAAACT GGATGGAGCA 
    TATCCACCGT GAGAATTTTC CTTGTTTACT CTTTGCGAAA TGCTCTGTAG 
    TTGTTATTAC GCGTTGAGTT TTAGGGGTTG CTCATGTGAA ATTGTAGTAT 
    GGCACTTTTC TCTTCAAGTG AATTTGCATA CTTTGTGATA TTCACGACG

    Gene models with high sequence identity

    1. AT4G20360.1 [+] show detail - RAB GTPase homolog E1B
      E-value: 4e-50; Score: 195.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Translation elongation factor EFTu/EF1A, bacterial/organelle 7.9e-102
    HMMPanther TRANSLATION FACTOR 7.9e-102
    superfamily Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal 6.8e-35
    superfamily P-loop containing nucleoside triphosphate hyd 3.9e-31
    FPrintScan Protein synthesis factor, GTP-binding 0.00000000001
    FPrintScan Protein synthesis factor, GTP-binding 0.00000000001
    FPrintScan Protein synthesis factor, GTP-binding 0.00000000001
    Gene3D no description 9.4e-30
    Gene3D no description 3.7e-36
    HMMPfam Translation elongation factor EFTu/EF1A, C-terminal 2.7e-39
    HMMPfam Protein synthesis factor, GTP-binding 9.4e-37

    See the detailed result >

    AT4G20360.1

    Model type
    Protein coding
    Short Description
    RAB GTPase homolog E1B
    Computational Description
    RAB GTPase homolog E1B (RABE1b); FUNCTIONS IN: GTP binding, translation elongation factor activity, GTPase activity; INVOLVED IN: peptidyl-cysteine S-nitrosylation; LOCATED IN: in 9 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor EFTu/EF1A, bacterial/organelle (InterPro:IPR004541), Translation elongation factor EFTu/EF1A, C-terminal (InterPro:IPR004160), Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal (InterPro:IPR009001), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: GTP binding Elongation factor Tu family protein (TAIR:AT4G02930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR