K09841

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09841

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K09841

Determination of introduced cDNA(s)

  • J013146B15 - Rice Full-length cDNAs - Original: J013146B15

    full reading [+] show sequence

    Nucleotide sequence: J013146B15 - full reading 
    GAGCAGGTTG GAGGTGTAAA GAGAGAACGA ACCATCAGGA AGAAGACTTG 
    GGGACTTGGT TCGAAGTCCA CGCCCGCCCA TCCTCGCCGT CGCTGCCGCC 
    GCCGGCGAGC CGCCGGAATC CAGATCCAGA GAGAGAGAGC CGCCGCATCC 
    GGTCGACATG GAGATCGCGG TGGGCGCCCT GTCCGGCATG GTGGACGCTC 
    TGCCGGCCAA GCTCGGCGAC CTGCTGCAGC AGGAGTACAC GCTGCTGTCC 
    GGCGCCCGCG GGGACGTCGG CTTCCTCCAG TCCGAGCTCG GCACCATGAA 
    CGCCGCCCTC CTCCGGTGCG AGTCCCTCGA GAGCTCCGAC GTCCAGACCC 
    GGGCCTGGGT CGCCCAGGTC CGCGACCTCG CCTACGACAT CGAGGACTGG 
    ATCGACCTCT TCGCCCACCG CGTCGACGGC GGCGCCGCCG CCTCTCCGGG 
    CGCTGCGGCC GCCACCTCCT CCTCCTCCTC CTCCGGCGGG TTCCTCTCCT 
    GGGTGCGCTG CTGCGTCAAC AAGGTCACGA CGCTCCCCGC CCGCCACGTC 
    ATCGCTACCG AGCTGCAGGA GCTCAAGAAC CGGGTCATCG AGCTGAGCGA 
    GCAGCGGAAG CGCTACAGGT TCGATCCGCC GGCGCGTCAC GCCGGCGGCC 
    GGAGCGGCGT GGCGGCCGTT GACCCCAGGC TGGTTGCGCT CTATGCTGAC 
    ACTAGTTCCC TCGTCGGCCT GGATGCGCCG GTGAAGAAGG TGTCCGAGAT 
    GGTGGTGGAC GACGGCACGA CTGGGCTCAA GGTGGTTTCC ATCTCCGGGA 
    TGCCGGGCGC CGGGAAGACG ACGCTTGCCA CGGCGGTGCT CCGGCGACTC 
    AAGGAGGAGA ACAAGTTCCA TTGCAGCGCT TTCGTCTCCG TCGGTCAGAA 
    GCCGGACATT GTAGGTAAGA CACTGAAGGG CATCCTCTCC CAGATCGGCA 
    ATGGGTATGC AGGAGGCGAA GATATTGGCC GATTGATCGG AATGCTGAGA 
    GATGAATTGA AGGATAAGAG GTACCTCATT GTCATTGATG ATTTATGGGG 
    TAGAACAGAA TGGTCAACAC TCAAGTGTTG TTTCCGAGAT GATAATCTTG 
    GCAGTAGGAT AATGGTCACA ACCAGAAATG ATGAGTTGGC AAAGGAATGT 
    TCTTCCAATT CGGATGAATC AGTTTACAAA ACTGGTCTCC TTAGTGACGC 
    GGACTCCAAA GATTTATTTT CCAACAAAGC TTTTGGGAAA GGGAAGGATT 
    GTCCTAACCA TTTGAAGGAT CTCTATGATA TAATCGTGGA AAGATGTGGG 
    GGCTTGCCGC TTGCTATATC TAGCGTAGCT GGCGCACTAG CACATCGTTT 
    TTCAAAAGAT GAATGGGAGA GGTATGAATC TAACTTGCTA CCTAGTTCAC 
    ATTCCGATGA GCTGAACTTG AAGCAAATAC TTAATCTGAG TTACAACGAT 
    CTACCTTCAC ATCTCAAGTC ATGTATGTTG TATCTAAGCA TATTCCCAAA 
    TAAATATGAA ATTGATGTGG AGCGCTTGGT GAGGCGATGG ATTGCTGAAG 
    GATTCATCGC TGATGCACGC CATGCAAGCA AAGAGGAGAC AGCAAGAAGT 
    TACCTTACTG ATCTCATTAG CAGAAACCTG ATCCAGGCAT TGCATCTGAG 
    ACATAATGGC ACCCCAAGCT GCTACACACT TCACCCAGTA ATACATGATT 
    TCATTGTGGT CAAGTCCATG GAAGAGAACT TTGTCACTGT TCTAGATGCT 
    AAGAAAGAAG CTCTCTCCAC CAACAATGGC ACAGTCCGGC GACTCTCTCT 
    TCAAAACAGT GTCAAACAGG ATCTTGCTGG TGCACGAAAT GATATGATCA 
    AGCATGCTCG CTCAGTGACT GTCTTTGGTC ATGCCAATGG GGTGCCTCGC 
    CTGAATGATA TGAGCGTATT ACGTGTTCTG GATCTGGAAG GCTGCAATGG 
    TCCATTATGC CTCGATGGCC TCTGCAAATT GATTCTTTTG AGGTACCTGA 
    ACCTCAGGGG AACTGATGTC AGCGAGCTCC CAGCACAAAT TGGGGAGCTT 
    AGGTGCCTGG AGACACTTGA TGTGAGATCT ACGAAGGTGA AAGAGCTACC 
    TGCCAGCATT GTCAGCTTGG AAAAGCTAAT GCATTTGCTT GCTGGAAATG 
    CTAAGTTGCC TGGCGAGATC AGTAAGATGA ACGGCCTACT AACGTTGTCA 
    TGCGCCAACG TCTGGAAGAA CACAGGGAGT GTCTTGCCAG AACTTGCTGA 
    TCTTGCAAAC TTGAGGGAAT TGGAACTGTT TTGTGATGCT TCTGAAATCT 
    CTGGTGATAA TAAGACACGA GTCTCTTTTT CTAGCGACGG ATTCAAAAGG 
    CTTAAGCAGC TGAGCATCCA GGGCAGCTTG CCATCAGTGG CCTTTGTTAA 
    CAGTTCCTTG CGAAAGGTTG AAGTTCTTGA GCTGAAGTAC GAAAAAGGCA 
    TTTCAGATGG GTCAAATGGT GTGTCTGGTA TAGAGCATTT GCCTAGCCTG 
    AAGCATGTAT TGATTGAGTT CTCGCAGAAG GATGCTGGCG CCACTGCGAC 
    AATCGCTTCT GTGAGGAACG CCGCTGAGAT GGTTCACCCT AATCATCCAG 
    ATGTCTCTGT CAAAGTTGAT GGAAAGGCCA TCTGATACGG TCTGGAGTTT 
    GTTTCAGAGC AAGAGGGATA TAGTACACAC TTGCACGGTA CTTTCTGCCG 
    GATTTCTTTG TTGTGTTGAA TTGAGTTTTG AGTTAATGCC ATTCTTTGTC 
    ACTCTGCTTA T

    Gene models with high sequence identity

    1. AT3G07040.1 [+] show detail - NB-ARC domain-containing disease resistance protein
      E-value: 2e-62; Score: 238.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 1e-21
    superfamily P-loop containing nucleoside triphosphate hyd 5.2e-17
    Gene3D no description 0.00000002
    Coil coiled-coil 0
    HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 0.000000026
    HMMPfam NB-ARC 5e-65
    FPrintScan Disease resistance protein 5.2e-18
    FPrintScan Disease resistance protein 5.2e-18
    FPrintScan Disease resistance protein 5.2e-18
    FPrintScan Disease resistance protein 5.2e-18

    See the detailed result >

    AT3G07040.1

    Model type
    Protein coding
    Short Description
    NB-ARC domain-containing disease resistance protein
    Curator Summary
    Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1.
    Computational Description
    RESISTANCE TO P. SYRINGAE PV MACULICOLA 1 (RPM1); FUNCTIONS IN: protein binding, nucleotide binding; INVOLVED IN: defense response, plant-type hypersensitive response; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G35450.1); Has 20241 Blast hits to 16785 proteins in 626 species: Archae - 16; Bacteria - 1308; Metazoa - 4084; Fungi - 259; Plants - 14046; Viruses - 4; Other Eukaryotes - 524 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013092M02 - Rice Full-length cDNAs - Original: J013092M02

    full reading [+] show sequence

    Nucleotide sequence: J013092M02 - full reading 
    GTCGAGTCTT ACAAACATTT CTTCTCCTCT CTCTCTCTCT CTCTCTCTCA 
    ACTCCACCAC ATTTGTCTGT GTTCTTGCTG TCTCTTCTTC TCCTACTTCC 
    TCTACTCGAT TCGAGGTTTG GCTGCTGCTG CTGTTGCTGC TGATAGTGGT 
    GGTGGTGGGT GGGAGCAGAA GCAGAAGCAG GAGGCAAAGA AAATCTCGAG 
    GAAGGAAGCA GAAGAAGCAG CCAAGAAACG CCGCCATCTC ATCTGGATGC 
    GCTGAATCTA TCTGCCGCGG TGGAGGTTGT GGAATCATGG TTTCAAAGTC 
    ATATACAAAT CTTCTAGATA TGAGTGGTGA AGATGTGTTT GACTTTCAGC 
    AACCATTTAG ATCGCTTCCT CGTTTTGTGA CTTCCCCAAG CATCACATCT 
    AATCCTGATT GGGATACAAG TAATGCTGAT GATTCAGTTG GTCCTGCATC 
    TTGCTGTGTA AGGAAAATAA TCGTCTCCAA CTTTCTTCCA CTAAACTGTA 
    CCAAAGATGA AGCTACTGGA CAGTGGTCCT TCTCAATGGA TGACAATCAA 
    CTTCTTGTTC AACTTAAAGA TGGATTTCCA ATGGAGAGCG AAGTTGTTTA 
    TGTGGGTAGC TTGAACGCTG AAGTTGATCC TGGTGAGCAA GATCAACTTT 
    CACAGAAACT TTTCAGAGAA TACAAATGCA TACCTACTTT CCTCCCAGCT 
    GACCTCCAGC AGCAGTTCTA TCATGGATTC TGTAAACAAC AATTATGGCC 
    ACTTTTCCAT TATATGCTTC CTATTTGCCT CGACAAAGGC GAGCTCTTTG 
    ACCGCTCTCT ATTTCAAGCC TATGTTCGGG CAAACAAAAT ATTTGGTGAC 
    AAAGTTATGG AGGCCATCAA TTCAGATGAT GACTGTGTGT GGGTTCATGA 
    TTATCACCTC ATGCTTCTCC CAACCTTTTT AAGAAAAAAG CTTCATCGCA 
    TCAAAATTGG TTTCTTCCTT CACAGTCCAT TTCCCTCCTC TGAAATCTAT 
    AGGACACTGC CAGTAAGAGA TGAAATTTTG AAGTCTCTTC TGAATGCTGA 
    TCTCATTGGC TTTCAAACAT TTGACTATGC CCGCCACTTC CTTTCATGTT 
    GCAGCAGATT GTTAGGCCTT AATTACGAGT CAAAACGTGG TCACATCGGT 
    ATAGAGTACT TTGGCCGTAC GGTGAGCCTC AAGATCCTTG CTGTGGGTGT 
    ACATGTTGGT CGTCTTGAGT CTGTGTTGAG GCTGCCTGCC ACAATTAGCA 
    AGGTTCAAGA AATTGAGCAA AGATATAAGG GTAAGATGGT GATGTTGGGT 
    GTAGATGATA TGGATATCTT CAAAGGGATC AGTCTAAAAT TGCTTGGCTT 
    GGAATTTCTT TTGGAGAGAA CTCCAAAGCT AAGAGGGAAG GTTGTCCTTG 
    TGCAGATTAT AAATCCTGCA AGAAGCACTG GAAAAGATGT GGAGGAAGCA 
    ATAAATGAAG CCGTCTCTGT AGCTGAAAGG ATAAACATTA AGTATGGTTC 
    TGCTGAGTAC AAGCCTGTCA TCCTTATCGA CTACCCCATA CCTTCTTATG 
    AGAAGATTGC ATACTATGCT GCATCTGATT GCTGTATTGT AAATGCTGTG 
    AGGGATGGGA TGAACTTGAT ACCATATGAG TATACTGTCT GCAGGCAGGG 
    AAATGAGGAG ATTGATAAGC TCAGAGGTGT TGATAAGAGC TCACATCACA 
    CAAGCACACT AATTGTGTCT GAGTTTGTTG GTTGCTCCCC ATCACTTAGT 
    GGTGCTTTCA GGGTAAATCC TTGGAGTATT GAAGATGTAG CTGATGCATT 
    ATATAAAGCA ATGGATTTGA CTCAATCGGA GAGG

    Gene models with high sequence identity

    1. AT1G60140.1 [+] show detail - trehalose phosphate synthase
      E-value: 0; Score: 671.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycosyl transferase, family 20 5.9e-163
    HMMPanther TREHALOSE-6-PHOSPHATE SYNTHASE 1.3e-125
    Gene3D no description 3e-73
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 3.1e-132

    See the detailed result >

    AT1G60140.1

    Model type
    Protein coding
    Short Description
    trehalose phosphate synthase
    Curator Summary
    Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.
    Computational Description
    trehalose phosphate synthase (TPS10); FUNCTIONS IN: transferase activity, transferring glycosyl groups, trehalose-phosphatase activity; INVOLVED IN: trehalose biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Glycosyl transferase, family 20 (InterPro:IPR001830), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: trehalose-phosphatase/synthase 9 (TAIR:AT1G23870.1); Has 4634 Blast hits to 4564 proteins in 1018 species: Archae - 52; Bacteria - 2697; Metazoa - 162; Fungi - 655; Plants - 601; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J013000O01 - Rice Full-length cDNAs - Original: J013000O01

    full reading [+] show sequence

    Nucleotide sequence: J013000O01 - full reading 
    GCCCCTGCAC CTGCGAACTC TCCACGCCTC CACAAATAAA GCTCGTCCCG 
    AGGAAGGGCG GCGACCCACC CCCCCCAATC GCCAAAACCC TAACTCCGAT 
    CCGATCGAGC TCTGCTTCCC ATGGCGACTG CCGCGAGCCA GGCGAGCCTC 
    CTGCTCCAGA AGCAGCTCAA AGATCTCGCG AAGAACCCCG TGGATGGGTT 
    CTCGGCGGGG CTTGTGGACG ATAGCAACGT GTTCGAGTGG CAGGTCACCA 
    TCATCGGCCC GCCCGATACC CTGTATGATG GAGGCTACTT CAATGCAATA 
    ATGACCTTCC CCCAGAATTA TCCGAATAGT CCCCCATCAG TAAGGTTTAC 
    CTCTGAGATG TGGCATCCAA ATGTTTATCC TGATGGGCGC GTATGCATTT 
    CTATCCTTCA TCCACCTGGC GAAGATCCCA ACGGTTATGA GCTTGCGAGC 
    GAACGTTGGA CACCTGTGCA TACAGTTGAA AGTATAGTTC TGAGCATCAT 
    TTCGATGCTC TCTAGTCCAA ATGATGAGTC TCCAGCAAAT ATTGAAGCGG 
    CTAAGGATTG GAGAGAAAAG AGGGACGATT TCAAGAAAAA GGTTAGACGC 
    ATTGTTCGTA AATCACAGGA AATGCTCTGA AAGATAAGGA GCACAAGGGG 
    GAGTAAGCGA GTGCTACAAC AGGTGCACTA CACTTAACTG TCTGTCGTCA 
    AACGACTACC TAAAGATAGC ATTTTTGCTT CTTCCCCTGT ATATTTCCCC 
    CTCAGTGTCA TTCGAGTGGT GATGTTGGTC TTGTCTCCGA GATGCTCGGA 
    AATGTTGCCT ATTCTAGAAA TTTCGATTGT ATTGTGTGGC ATGGAGTGTC 
    AACGTTGAGG AATATTTTGG AATGCTGCCA ATTAGTCATA ATTGTCGTAA 
    TGAACTTTTC AT

    Gene models with high sequence identity

    1. AT5G59300.1 [+] show detail - ubiquitin carrier protein 7
      E-value: 8e-70; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ubiquitin-conjugating enzyme/RWD-like 9.4e-64
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 G 3e-108
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 3e-108
    HMMSmart Ubiquitin-conjugating enzyme, E2 2.6e-72
    ProfileScan Ubiquitin-conjugating enzyme, E2 41.967
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 1e-58
    HMMPfam Ubiquitin-conjugating enzyme, E2 8e-52

    See the detailed result >

    AT5G59300.1

    Model type
    Protein coding
    Short Description
    ubiquitin carrier protein 7
    Curator Summary
    ubiquitin conjugating enzyme E2
    Computational Description
    ubiquitin carrier protein 7 (UBC7); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 13 (TAIR:AT3G46460.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR