K09842

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09842

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09842

Determination of introduced cDNA(s)

  • J023138G02 - Rice Full-length cDNAs - Original: J023138G02

    full reading [+] show sequence

    Nucleotide sequence: J023138G02 - full reading 
    GAGTAGCAGA GCACCGCACG TCGTCGCCGC GTCGCGCGAC GGAGTGGAGA 
    GGAGACCATG GCGGCGGCGG CGGCGGTAAG GCACCGGACG GTGGAGGCGA 
    ACGGGATCTC GATGCACGTC GCGGAGGCGG GGCCGGGCAG CGGCACTGCT 
    CCCGCGGTGC TGTTCGTGCA CGGGTTCCCG GAGCTGTGGT ACTCGTGGCG 
    CCACCAGATG GGGCACCTGG CCGCGCGCGG ATACCGCTGC GTCGCGCCCG 
    ACCTCCGCGG CTACGGCGGC ACCACCGCGC CGCCGGAGCA CACCTCCTAC 
    ACCATCTTCC ACCTCGTCGG GGACCTCGTC GCCCTCCTCG ACGCCCTCGA 
    GCTCCCCCAG GTGTTCGTGG TGGGGCATGA CTGGGGCGCC ATCGTGTCGT 
    GGAACCTGTG CCTGCTGCGG CCTGACCGGG TGCGCGCGCT TGTCAACCTC 
    AGCGTCGCGT TCATGCCGAG GCGCCCCGCC GAGAAGCCCC TCGACTACTT 
    CCGCGGCGCG TATGGCGATG ATTACTATGT CTGCCGATTC CAGGAACCTG 
    GAGTTGAAAA AGAATTGGCC AGTCTTGACT TGAAGAGATT CTTCAAATTG 
    GCCTTGATTG TTCAAACAAC AGGATCTTCT GCTATGTCCA TTAAAAAAAT 
    GCGGGCAAAC AACAGGGAAG TAACATTGCC TCCTTGGCTC TCTGAGGAAG 
    ATATCAGTTA TGTAGCAAGT GTGTATGCAA AAACTGGCTT CGCTGGTGGT 
    ATTAATTACT ACCGATGTTT TGACCTGAAT TGGGAGCTGA TGGCACCATG 
    GACAGGTGCA AAAGTTCTAG TGCCAACAAA GTTTATTGTC GGGGATGGTG 
    ACCTGGCTTA CCATCTCCCA GGAGTCAAAA GCTACATACA CAAGGGTAGG 
    TTGAAGAAAG ATGTTCCTAT GCTTGAGGAA GTAGTGGTAA TCAAAGGTGC 
    TGGGCACTTC ATCCGGCAGG AGAGAGCACA GGAAATCAGT GATCACATCT 
    ATAACTACAT CAAGAAGTTC AATACGGGTG TTTCTTCTCC AAAATCATCG 
    AGGTTGTGAG ATAATTTACT GCTGTAAAGA ATAATTTCAA GAGAATAAAG 
    GATGTAATGC TTTAGGCTGA TGGTGTGGTT CTTTTGTCAT GCTGTGTTTG 
    GCTAATGCTG CAGAGCTTTT GTAATGCCAA GTTTGGCTAT CTTGGCAAAC 
    AATGAAATTT CAAGGGTCTG AATGAATTTA AAAGAGCTTC TAGGATGCCT 
    ATAAACT

    Gene models with high sequence identity

    1. AT4G02340.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 2e-98; Score: 356.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther EPOXIDE HYDROLASE 1.5e-126
    HMMPanther ALPHA/BETA HYDROLASE RELATED 1.5e-126
    Gene3D no description 2.2e-62
    HMMPfam Alpha/beta hydrolase fold-1 3.7e-16
    FPrintScan Epoxide hydrolase-like 3.9e-42
    FPrintScan Epoxide hydrolase-like 3.9e-42
    FPrintScan Epoxide hydrolase-like 3.9e-42
    FPrintScan Epoxide hydrolase-like 3.9e-42
    FPrintScan Epoxide hydrolase-like 3.9e-42
    FPrintScan Epoxide hydrolase-like 3.9e-42
    FPrintScan ABHYDROLASE 4.5e-05
    FPrintScan ABHYDROLASE 4.5e-05
    FPrintScan ABHYDROLASE 4.5e-05
    superfamily alpha/beta-Hydrolases 2.8e-68

    See the detailed result >

    AT4G02340.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: epoxide hydrolase activity, catalytic activity; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G05600.1); Has 22331 Blast hits to 22276 proteins in 1970 species: Archae - 173; Bacteria - 16575; Metazoa - 610; Fungi - 564; Plants - 630; Viruses - 11; Other Eukaryotes - 3768 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR