K09848

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased length (PATO:0000573) (Seed::Shape::long) decreased width (PATO:0000599) (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09848

Determination of introduced cDNA(s)

J023049F22 - Rice Full-length cDNAs - Original: J023049F22

full reading [+] show sequence

ATGTCCTGAA TCAGTCCACC CCTTTCCTTC GCTCTCTCTC TCTAACTGCA 
GATTTCCCTC CCCTTTCAAC GCGCGCGCGG GTGGTGGGGG GAGGCACGGC 
ACGAGGCGGA GGCGGCGGAG GAGGTGGTGG GAATCGATCC CTTTCTGTTC 
CGGCCGCCTC GATCGCCCGC TACCCGCACG CCGCCTTTTC GTCCCGGTGG 
ATTTCTGCCT CCCTTTTCTC GATTCTTTCC TTTTTCTTCT TCTTCTGCAT 
GCGCGGCGGG CTGTGACGCC GACCATGGGG GACGCCTCGG CATCCACCTC 
CGCGCCCGCG ACGCCCACGT CCACGCTCAT CTGCCGGGAG GATGGCAACG 
ACCTCTTCTC CGCCGACCCC GCCGACGACG ATGGCGGCGG CGGCAGCGGC 
GGCGACTGGG AGTTATCCAT TGCTGACGAC GACCATGTGT TGCTCATGGA 
CCGGGACGAT GAGTACCTCG CGCTGATGCT GTCCAAGGAG AGGTGTGCCG 
GCGGCGGCGG CGGCGGCGAG CGTGGGGATG AGGAGGAGGA GGAGATGGTG 
GAGGAGTGGA TGAAGAACGC GCGCGCCTGG TGTGTCGGCT GGATTGTTAA 
GACGAACGCG GGATTCCGGT TCAGCTTGAA GACGGCGTAT GTCGCGGTGA 
CGTATCTCGA TCGGTTCTTG GCGCGCCGGT GTGTCGATAG GGACAAGGAG 
TGGGCGCTGC AGCTCCTCTC GGTGGCGTGC CTGTCGCTGG CGGCGAAGGT 
GGAGGAGCGC CGGCCGCCGC GGCTGCCGGA GTTCAAGCTG GACATGTACG 
ACTGCGCGTC CTTGATGCGG ATGGAGCTCC TCGTCCTCAC CACGCTCAAG 
TGGCAGATGA TCACCGAGAC ACCCTTCTCC TACCTGAACT GCTTCACCGC 
GAAATTCCGG CACGACGAGC GGAAGGCGAT CGTCCTGCGC GCCATCGAAT 
GCATCTTCGC CTCGATCAAA GTCATTAGCT CGGTGGGGTA CCAGCCATCA 
ACGATCGCTC TAGCAGCAAT CCTCATCGCT CGGAACAAGG AGACGGCGCC 
TAATCTAGAC GAGCTCAAGT CGGTCGTGGG CTCGTTATGG CAGCAACTAG 
ACACCGGGCA TGTGTATTCC TGCTACAACA AGATGATGAT TCAAGAGGAC 
AGGTCGATGC AATCGACGAC GGAGGTAGCT TCCTCGGGTG TCTCTGTTGC 
CCACATTGGG GGATCGGAGG ACAGCGCCAT GGGAGGGGCC AATAATGCCA 
CCACCTTGGA GGCAACCCCG GACAAGAAGA GGAAAAGGTT GCACTCGCCT 
CAGCGCCAGT AGAGGGAGGA GCTGGAGGCT GGAGCTGGAC AGCATGTTGG 
TTGGAGTCCA GCTCTGCAAT TTTTAGTTGA TCATTTTCAC CCTTTTTCTT 
TTGTTTCAGC TGAGCCCTAG TCAGTGCTCT TGCAAGTTCA GGGGGGGTTG 
GCCAAATGGA GGGGCCAACA TTTGATTCTT CTTCTGATTA TGCAATTGTT 
ACAGTTGATT GATTAGTTAG CAATGGAAAG ATTCTGGTTT TGTGGAGATC 
TTTCCCTGGC CCAGAAAGGT ACTAGTGTAA AGAGCAGAGG AAAAGGCCTG 
AAAACTGATA AAGAGCTCTT GCTCAAAGTA GGGAGGAAGT CCTCACTGAG 
ATGTGGAGGC AGAGAGAGGG AATCCCAATT CCCAAGTATT GAGTAGAAGT 
CATTTTTTGT GGATACTGTA TGGTTATCTG TTACTCTCTG TTGAGTCATG 
CCATTTTGGT TCATTAGCAA TTTCCTGATG CTAAAGCCAA ACAGTGGTAG 
TACATTTTTG TTGCAAGAAC TGATTGATAG TAGTTGGATA GCCAGGGGGC 
AGGGGCCATC TCTCTCACTG TACTTCACTC T

Gene models with high sequence identity

AT4G37630.2 [+] show detail - cyclin d5;1
E-value: 5e-30; Score: 129.00

InterPro Scan Digest

Program	Description	E-value
HMMPIR	Cyclin, A/B/D/E	0.00027
HMMPfam	Cyclin, N-terminal	1.5e-22
HMMPfam	Cyclin, C-terminal	8e-05
HMMPanther	Cyclin D	3.8e-45
HMMPanther	CYCLINS	3.8e-45
superfamily	Cyclin-like	1.7e-26
HMMSmart	Cyclin	4.8e-10
Coil	coiled-coil	0
Coil	coiled-coil	0
Gene3D	Cyclin-related	3.4e-22

See the detailed result >

AT4G37630.2

Model type: Protein coding
Short Description: cyclin d5;1
Curator Summary: core cell cycle genes
Computational Description: cyclin d5;1 (CYCD5;1); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: regulation of cell cycle; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D1;1 (TAIR:AT1G70210.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR