K09850

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09850

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09850

Determination of introduced cDNA(s)

  • J033069B21 - Rice Full-length cDNAs - Original: J033069B21

    full reading [+] show sequence

    Nucleotide sequence: J033069B21 - full reading 
    GACCGTCCCT ATCGCGTCGG ATCGCCACCC ACCTCGCCGC CGCTGCTTGC 
    TTCACTCGCC TCAGATCCGC GCCGCCGCCC CCCGCGAATC CCCTCTCCTC 
    CCCGAACCCT AGCCCCGCTC TCGGGGGTTC CCCCTCCTCC TCCGCCGCCA 
    GCCGCGTCCG CCACTTCCAT CGGAGGTGAT CGATCGAGCG GGGGTGGGGG 
    GAGAGGTTGG GCGGCTTGGA TTGGAGAGGG CTCGGAGTGG ATGTCGAGGA 
    GGTCGGTGAA TCCGAGCCGG CGGGTGGCGG ATGGGGGATT GCCGTCTGTC 
    GGTGGCCTGC TTCACCCCAA GTCACGCTCG CCGCCCGTGC TCACCATCGC 
    CCTCGTGGTC CTGGGTGTCA TTATTCTGAT CGCCTACTTC AATAGCGGCT 
    CAGGTGTAAC AGTTACTAGC AGAGAAGCTG TGAGCAGGTC TGAAGGTTCT 
    TGTACACCAG AAGTCATGCA AGCACTTCCT TATCTTAAAA AGGCATATGG 
    CAATGAGTTG CATAAGGTTC TCCATGTTGG CCCTGATAGT TGTACAGTAG 
    TTTCTAACTT GTTGAAGGAA GGGAAGGTTG AAGCATGGGG AGTGGAGCCT 
    TATGATTTGG AGGATACTGA TAGTAGCTGC AAAAGCCTTG TGCGCAAGGG 
    CTTTGTTCGT ATGGCTGATA TCAAGTTCCC TCTTCCATAC CGCCAAGATT 
    CCTTTAACCT TGTTATCGTA TCAGATGCTT TGGATTATTT GACCCCAAGA 
    TATCTGAACA AAACACTTCC AGATTTAGCA AGGATTTCTA CAGATGGTCT 
    TGTTATCTTT GCCGGCAATC CAGGTCAACA GAAGGCTAAG GTTTCTGAAC 
    TACCAAAATT CGGAAGACCG GCAAAGTTGC GGAGTTCTTC GTGGTGGTCG 
    CGATACTTTA TCCAGACTGG CTTGAGAGAG AATGAAGGGC CATTGAAGAA 
    GTTTGAGCAG GCTGCTTCCA AGAACAAATA CAAACCAGAC TGTCAAATCT 
    TCCATCTTAG CTCGTAGGCG TGTTCTGATC TAGGTGATGT GTATCCATGA 
    AACCTGGATC GTTGCCTCGC CGGTTTTGTA AGCAATATCC TGTTTACCCC 
    CGTTGACTTG CGCTTCTTTT ACACGGAGGA ATTGTCACAT TAAGAGCCAG 
    CCAGCCTTGA GCATAGGTAG CTTATGTAGA GAGATTTGCC ACATGCTGCT 
    AGAAAATTCT TCCTGGAAAG TTAAATTATG TGTTACCAAG AGGTGCAAAT 
    TGAAGCCCTG AGGATATATA TGTAAGAACT TCACACTGTT GTACCCTGTT 
    ATTCTTCTTG GTGTTACAGT TATTCCTGGT GAACCAGCTG CAGTTCCGTG 
    AGCAGTTTGT AATGTACTCA GTTCAAGAGA GAGAGAAAAA ATATATATCT

    Gene models with high sequence identity

    1. AT3G49720.2 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 1e-88; Score: 323.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G49720.2

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, Golgi apparatus, plasma membrane, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023038G19 - Rice Full-length cDNAs - Original: J023038G19

    full reading [+] show sequence

    Nucleotide sequence: J023038G19 - full reading 
    GTGCAGCTAG CGCGCGGTAC GGTAGGCACC AGCTATACAG CGCGCCACAC 
    ACAACAATGG CCGGCGCTAC CGCTGCCGCC GTCTCCTCCT CCTTCCTCGC 
    GCTCGCGTTG CTCTCGCTCT GCGCCGCGGC CGCTGGCGGC TCGCCTCAGC 
    TGGACGCGGA GGCCGCGCGG CAGCAGGAGG CCGACCGCGT GACGAGGCTG 
    CCGGGGCAAC CCGCCGTGCG GTTCGCGCAG TACGCCGGGT ACGTGACGGT 
    GAACGAGACG CACGGCCGCG CGCTCTTCTA CTGGTTCTTC GAGGCCACCG 
    CCGCCGCCGA CAAGAAGCCC CTCGTCCTCT GGCTCAACGG CGGGCCTGGG 
    TGTTCGTCTG TTGGGTATGG AGAAGCGGAG GAGCTCGGTC CATTCTTGGT 
    GCAGAAGGGC AAGCCGGAGC TAAAATGGAA CAAGTACTCG TGGAACAAAG 
    AGGCCAATCT GATGTTCCTG GAGTCCCCTG TGGGTGTCGG CTTCTCATAC 
    ACTAACACAA GCTCCGATCT GCAGCAGCTT GGCGACAAGA TCACCGCTGA 
    TGATGCTTAC ATCTTCCTGC TCAACTGGTT CAAGCGCTTC CCTCAGTACA 
    AATCTCACGA CTTCTACATC GCTGGAGAGA GCTACGCTGG GCATTACGTT 
    CCACAGCTTT CGGAGAAGAT TTTCGACGGC AACAAGCAAG GCCCCAAGGA 
    GAACTACATC AACTTCAAGG GTTTCATGAT AGGGAATGCC CTGATGGACG 
    ACGAGACGGA CCAGACGGGC ATGATCGACT ACGCCTGGGA CCACGCCGTC 
    ATCTCGGACC GGGTGTACGC CGACGTCAAG AAGTACTGCA ACTTCAGCAT 
    GGAGAACGTG ACCGACGCGT GCGACAGCGC GCTCACCGAG TACTTCGCCG 
    TGTACCGCCT CATCGACATG TACAGCCTCT ACACCCCCGT CTGCACCGAG 
    GTCTCGTCGT CGGCGGCGTT CGGCCAGCGC CAGGTCGCCG TCCACGGCGC 
    CGCCCCAAAA ATCTTCTCCA AATACCATGG GTGGTACATG AGGCCGGCGG 
    GGTACGATCC GTGCACGTCG GATCACGCCG AGGTGTACTT CAACCGGGCT 
    GACGTGCAGG AGGCGCTGCA CGCCAACTTG ACCAATATCG GCTACAACTG 
    GACGCACTGC AGCGACGTGA TCGGCAAGTG GAGAGATGCT CCCTTCTCGA 
    CTCTCCCCAT CATCCGTAAG CTCGTCGCCG GCGGCATCAG GGTCTGGGTT 
    TTCAGCGGTG ACACCGATGG AAGGATCCCC GTGACGTCGA CGAGGCTCAC 
    CCTGAACAAG CTTGGGCTGA AGACGGTGCA GGAGTGGACG CCGTGGTACG 
    ACCATCAGCA GGTTGGAGGA TGGACGATCC TCTACGAGGG CCTGACGTTC 
    GTGACGATCC GCGGCGCCGG GCACGAGGTT CCCCTGCACG CGCCGAGGCA 
    GGCGCTCAGC CTCTTCAGCC ACTTCTTGGC TGACAAGAAG ATGCCTCCGA 
    CGGCGTTCCC CTAGTCGCTC GCATGCAGTC TGCCTTCTTC AACGATGGCG 
    AGGAACGGGC GTCGTGCGCC CACTAGGTTG TTTTCCAGCG ATACCAACTG 
    ATCAGGAAAT TTTCTTTTCT TTGGTCCAAG ACTCCAAGTC ATGTAACACA 
    GTGGAAATTC GATTGGAACA ATCGATAACA ATAAAATCAT ATATAGTGTT 
    GATTGATTTC GATGCTCGCG

    Gene models with high sequence identity

    1. AT5G23210.1 [+] show detail - serine carboxypeptidase-like 34
      E-value: 5e-180; Score: 627.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 2.9e-143
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    PatternScan Peptidase S10, serine carboxypeptidase, active site 0
    FPrintScan Peptidase S10, serine carboxypeptidase 2.1e-29
    FPrintScan Peptidase S10, serine carboxypeptidase 2.1e-29
    FPrintScan Peptidase S10, serine carboxypeptidase 2.1e-29
    FPrintScan Peptidase S10, serine carboxypeptidase 2.1e-29
    HMMPanther SERINE CARBOXYPEPTIDASE II (CARBOXYPEPTIDASE 6.1e-262
    HMMPanther Peptidase S10, serine carboxypeptidase 6.1e-262
    Gene3D no description 1.1e-140
    HMMPfam Peptidase S10, serine carboxypeptidase 9.5e-140

    See the detailed result >

    AT5G23210.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 34
    Computational Description
    serine carboxypeptidase-like 34 (SCPL34); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: vacuole, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 35 (TAIR:AT5G08260.1); Has 3785 Blast hits to 3735 proteins in 437 species: Archae - 0; Bacteria - 325; Metazoa - 634; Fungi - 858; Plants - 1544; Viruses - 0; Other Eukaryotes - 424 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023050B21 - Rice Full-length cDNAs - Original: J023050B21

    full reading [+] show sequence

    Nucleotide sequence: J023050B21 - full reading 
    GGATAACCAC CTTGCCTTGC TTGCCTCTCA TCAGACGATT GATCGACAAG 
    AGAGAGAAAG AGCTTGCGTC GCAATGACCG CCGTCGACTT GATGCCTGCA 
    GCTGACGACG ACAACAACAA GCAGTCATCC ACCGGCCTCC TCCACCACCA 
    CCAGCTCCCC GCCGCCGCCG ACAACGCCAT ACTACACAAT ACCAGGCGGC 
    TGGAGGGGAA GGTGGCCATC GTCACCGGCG GCTCGCGTGG CATCGGCGAA 
    GCCATCGTAA GGGCCTTCGT TCACCACGGC GCTCTCGTCG TCGTCGCCGA 
    CATCGACGAC GCCGGGGGCC ACGCGCTGGC CGCCGCGCTC GGCCCGCACG 
    CCTGCACCTA CGTCCACTGC GACGTGGCCG AGGAGGCCGA CGTGGAACGC 
    GCCGTCGCCA CCACGCTGGA GCAGCACGGC CGCCTGGACG TGCTGTGCAA 
    CAACGCCGGG GTGCTGGGCC GCCAGACGCG CGGCGCCAAG AGCATCGCGT 
    CCCTCGACGC CGCCGAGTTC GCCCGCGTGC TGCGCGTCAA CGCGCTGGGC 
    GCCGCCCTCG GAATGAAGCA CGCGGCGCGT GCCATGGTGC CCCGCCGCTC 
    CGGGAGCATC GTGTCGGTGG CGAGCGTGGC GGGCGTGCTG GGCGGCCTCG 
    GCCCGCACGC GTACACGGCC TCCAAGCACG CCCTAGTGGG GCTCACCAAG 
    AACGCCGCCT GCGAGCTCGG GGAGCACGGC ATCCGCGTCA ACTGCATCTC 
    CCCCTTCGGC GTGGCGACGC CGATGCTGGT GAACGCGTGG CGGCAGGGGC 
    AGGGAGGAGA TCACGCGGAT GAGGATCAGG CGGCGGCGAG CGAGGAGGAG 
    GAGGTGGAGA AGATGGAGGA GATGGTGCGG AGGCTGGCGA CGCTCAAGGG 
    GCCGACGCTG CGGGCAGGCG ACATCGCGGA GGCGGCGGTG TTCCTGGCCA 
    GCGACGAGTC CAGGTACGTG TCCGGCCACA ACCTCGTCGT CGACGGCGGC 
    GTCACCACCT CCAGAAACGT CATCGGCCTC TGAATTGAAT CTCTCTCTCT 
    CTCTCTTAGC TAATTACTAT TTCAGTTATA TATATATATA TATATATATA 
    AGTCCGTGAC CGTCCTCATC GATCATATGA TGATCGATGG ATGTACTCCC 
    GCATGCTCGA CTGTGCTGTC TGAAATCTGA TGACTGAATT CCAGCACTTG 
    CGCATTGTTG ATTATTATGC C

    Gene models with high sequence identity

    1. AT3G51680.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 4e-68; Score: 255.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Glucose/ribitol dehydrogenase 2e-39
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    FPrintScan Short-chain dehydrogenase/reductase SDR 2.9e-11
    HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 4.7e-139
    HMMPanther Short-chain dehydrogenase/reductase SDR 4.7e-139
    Gene3D NAD(P)-binding domain 1.2e-67
    superfamily NAD(P)-binding domain 1.4e-70
    Coil coiled-coil 0
    HMMPfam Short-chain dehydrogenase/reductase SDR 1.8e-29

    See the detailed result >

    AT3G51680.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: cotyledon, root; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26770.1); Has 119773 Blast hits to 119555 proteins in 3701 species: Archae - 1000; Bacteria - 77051; Metazoa - 6334; Fungi - 6742; Plants - 2947; Viruses - 5; Other Eukaryotes - 25694 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR