K09851

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09851

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09851

Determination of introduced cDNA(s)

  • J033126I22 - Rice Full-length cDNAs - Original: J033126I22

    full reading [+] show sequence

    Nucleotide sequence: J033126I22 - full reading 
    GTTCTTCCTC CTCCTCGAGG CTCGAGCTGC CACCGCCATT GGAGCGCCAC 
    GCCACGACAC GCGCCACCGC CGCAGAGGAG AGAGAGAGAA AATCCGGAGG 
    CAGGCGGCTT GGTGTGGGTT GATGGGCGCG GCGGGGGCGA TGGAGAGGGA 
    GCTCCTGGAG GCGTTCGAGG CGGCGAGGAA GGCGGCGGAC GCGGTCGGGG 
    AGGCGGCGGC GGCGGCCGGG GCCGGGGAAG GGGAGTCGCC GGAGGCCGCG 
    CGCTGCGTCG ACGCGCTGCG GAGGCTGCGC GGGGCTCGCG TCACCACCGC 
    CGCCCTCGTC TCCACTCAGA TCGGCAGACG TATTCGCTAT CTCACCAAGC 
    ATCCTCACTC AAGCATAAAA GCAACAGCTT CAGACCTGTT AGGACACTGG 
    AAAAAGGTTG TCATTGAAGA AGACAAGAAA AATGGGGCAC TGCAGAATGG 
    AAAATCGAGT TCTACTGTGG TAAAGGTTGA GAAGGTGGAG CCTATGAAAG 
    TTGAAAAGGC ATCACCAAGG GCTACTGTCA ATAATAATAA TATGGATACC 
    AGAGTTGTGA ACCACAAAGG TGGAAAGGTT GAGAAGTTTT CTAATGCTGA 
    GCTGAGAACC CAATCTATCA AGGTTGAGAA AGTACAAAAG GTAGTTCACA 
    AAGTATCTTC TGTTGAGAAG CCGTCTCCTG TCCAAGGTGG TCCTCCAAGA 
    CTGACATCCG TTGTTAAATG TGGTGATGCT AGTCGAGACA GAATTCGGGC 
    GATACTTGGT GATGCCTTCT CCAGAGTTTC TGAAGAGACT AGAAAGGATG 
    ACAGGGAGGA AGTGAGGAAC ATCATAGAAG AAGTAAAAGC ATGTGACCCA 
    TTCAGGATTG CTGTGATGGT AGAGTGTGCC TTGTTTCAGA AGCTGGGGAA 
    TTTTAATGGA CCTAATAAGC AAAGGTACAG ATCATTGATG TTCAATCTGA 
    AGGATGATCA CAACACAGAC TTCCGGAGAA GGGTTCTTCT AGGACAAGTG 
    CAGCCTGAGA GAATTGCTGA CCTAACCCCG ACAGAAATGG CTAGCGACAC 
    CAGGAAGCTT GAGAACAAGA AGATCGAGGA GAAGGCTCTG TTCGAGTGCG 
    AGCGTGGAGG AGCACCGAAG GCCACCACTG ATCAGTTCAA GTGTGGCAGG 
    TGCGGCCAGC GCAAGACTAC CTACTACCAG CTCCAGACTC GGAGCGCCGA 
    CGAGCCGATG ACGACGTTCG TGACCTGCGT GAACTGCAAC AATCACTGGA 
    AGTTCTGCTA AGCTAGGCAC ATCCTACTGA GAAGTGTTAG TGTAGTTGAC 
    CCTGGAGTTT GACAGGCAGG TTAGTTTCGG GCCCTGCTTA TCTGGGCCCG 
    TTTCATCTTT TTTCCCCTTA AGTTAGCTTG TTCCGAATTC GATTTGTTCT 
    AGTGCCATTT GACTGCATAA TGGCCGGCCG TTGGGCTTGC ATTGTCAGGC 
    TACTGCTGTT GTACTTATCA GTCTTGTTTA TTGTACCATT GGATGCAATA 
    ATGCCATAAT GGTCATGCTC ATGAGCTG

    Gene models with high sequence identity

    1. AT2G38560.1 [+] show detail - transcript elongation factor IIS
      E-value: 2e-73; Score: 273.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Transcription elongation factor, IIS 6.6e-149
    ProfileScan Zinc finger, TFIIS-type 14.637
    ProfileScan Transcription factor IIS, N-terminal 18.317
    ProfileScan Transcription elongation factor S-II, central domain 33.316
    HMMTigr Transcription elongation factor, TFIIS 1.5e-86
    Gene3D no description 2.8e-06
    Gene3D no description 3.1e-21
    HMMPanther TRANSCRIPTION ELONGATION FACTOR S-II 1.1e-52
    HMMPfam Transcription elongation factor S-II, central domain 6.6e-31
    HMMPfam Zinc finger, TFIIS-type 9.7e-20
    HMMPfam Transcription factor IIS, N-terminal 7.9e-12
    superfamily Transcription elongation factor S-II, central domain 6.4e-26
    superfamily Zinc beta-ribbon 3.1e-21
    superfamily Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal 4.9e-10
    PatternScan Zinc finger, TFIIS-type 0
    HMMSmart Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type 2.1e-09
    HMMSmart Transcription elongation factor S-IIM 1.8e-26
    HMMSmart Zinc finger, TFIIS-type 9.7e-24

    See the detailed result >

    AT2G38560.1

    Model type
    Protein coding
    Short Description
    transcript elongation factor IIS
    Curator Summary
    Encodes RNA polymerase II transcript elongation factor TFIIS. Complements yeast TFIIS mutation. Mutant plants display essentially normal development, but they flower slightly earlier than the wild type and show clearly reduced seed dormancy.
    Computational Description
    transcript elongation factor IIS (TFIIS); CONTAINS InterPro DOMAIN/s: Zinc finger, TFIIS-type (InterPro:IPR001222), Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type (InterPro:IPR003617), Transcription elongation factor S-II, central domain (InterPro:IPR003618), Transcription factor IIS, N-terminal (InterPro:IPR017923), Transcription elongation factor S-IIM (InterPro:IPR017890), Transcription elongation factor, IIS (InterPro:IPR016492), Transcription elongation factor, TFIIS (InterPro:IPR006289), Transcription elongation factor, TFIIS/elongin A/CRSP70, N-terminal (InterPro:IPR010990); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT2G42730.1); Has 1858 Blast hits to 1830 proteins in 294 species: Archae - 58; Bacteria - 2; Metazoa - 702; Fungi - 370; Plants - 279; Viruses - 52; Other Eukaryotes - 395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR