K09912

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K09912

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K09912

Determination of introduced cDNA(s)

  • J013158E09 - Rice Full-length cDNAs - Original: J013158E09

    full reading [+] show sequence

    Nucleotide sequence: J013158E09 - full reading
    GACTACCCAT CACTCCCCCA AGATTCCACG GATATTTTCT CTCCCCCTGC 
    TCCCGTCGCC ATCGCAAAGG AGAAAAAAAA AAGGTGAGCA ATCGCTTCTC
    TGCTCGCTCG GCTCAGATCT GCGTGTGTAC GCTGGTAGAT CTGTGGAAAG
    AGGTTCAATT TTTTGAGCCC AGTTCGCGAT CTGCGGTTCC GCGAGAGTGA
    ACGGATCTTC CGGATCGTGG AAATTCATCG TTTGCTTTTC TTTTTTTTTT
    TTGTTTCTTC TTTGGATGTG TCTCCGATCT GAATCCGCTT GATCTGGACA
    GAGGAGGAAG GAAGGAAGGA TGAGCGCCAC GGCGGTGTCG TCGCTGAACC
    CGGACGCGCC GCTCTTCATC CCGGCGGCGT TCCGGCAGGT GGAGGACTTC
    TCGCCGCAGT GGTGGGACCT CGTCAAGACC ACCGCCTGGT TCCGCGACCA
    CTGGTTCCAC GAGCACCAGC AGCTCGACGA GATGGCCGAC TCCCTCGCCC
    TCCACGACGC CGCCGCCGAC GACGACGACC TCGCCGGCCT CCTCCCCGAC
    GACGCCTTCG ACGACGACGA CGACGACGAC CTCTTCTTCG ACCAGACCCA
    TAACCTCCTC GTCGATCCCC CGCAGCCGCC CGCCGCTCTC AAGACTGGTA
    CCGACTGACT CACTCGCTTG CTCGCTTTGT TGATCATCAA AAGATCGAGT
    CTAAAACGAG AATTGCAGTG AAATTCATCG CCATGTCTCC CATGTGTGTG
    TGCAGATGCG GTGCTCAAGG CGCTGAGCCT GGTGTCTCCC AAGGGCGGCG
    ACGCGCCGCG GGGGCTCCGG GAGAAGCCCC GGCACTCCGA GAAGCCCACC
    AAGTACGCCG GCAGCCCGAG GAGCGGCGGC GCTCCCCGCG TCATCCACCA
    GCCTCGCTAG GCTGCGATGG CTAGGATGGC AAAAACTAAA GGATGTAGCA
    AAAGCATTGC GTCTTTGCGC CGCGGTGTTT TGCTTTGCTT CCTTCCTCCC
    GGCTGCTGCT GCTGGTGTGG TCTACTCAAA GTCTGGGTTT GTCCCTAGAG
    TTTATCTAGG AATTTAGTTG TGTCCTTTTG TATAGTATAA ACCAAAATGA
    CCCTAAAAAA AGTATGAACA AAATGCAACC TTTGTTCAGT GTTGCCTTGT
    AAGTTTAATG TTCATCTAGA GTTCGTCTAG GAAAATTCCA AAAAGAAGAA
    GTGGAAGAAG AATGTAGTAG TGTGCACTCC TGTTAATGTT CTGATGATGT
    GCAATAGCAA GCAGCCTAAT GTTGAATATT CAGACTTTTC CC

    Gene models with high sequence identity

    1. AT2G41430.5 [+] show detail - dehydration-induced protein (ERD15)
      E-value: 3e-14; Score: 77.00

     

    InterPro Scan Digest

    See the detailed result >

    AT2G41430.5

    Model type
    Protein coding
    Short Description
    dehydration-induced protein (ERD15)
    Curator Summary
    Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2.
    Computational Description
    EARLY RESPONSIVE TO DEHYDRATION 15 (ERD15); FUNCTIONS IN: protein binding; INVOLVED IN: response to water deprivation, response to high light intensity, response to bacterium; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G14270.2).
    Link
    InterPro Scan - TAIR