K10004

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10004

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10004

Determination of introduced cDNA(s)

  • J023057C24 - Rice Full-length cDNAs - Original: J023057C24

    full reading [+] show sequence

    Nucleotide sequence: J023057C24 - full reading 
    GCCGAGCAGC CGGAGAGTGA GGCGAGGCGA AGCGAAGGGA AGAGCGCGAG 
    GCAGAGTAAG CAGACGAGAA GAACAGCGCG CGGCGCGGTA GCTGAGGAGA 
    GTGGTGCGGA GATGGATCAC GAGGCGGACG CGTACCGGAC GGACCTGATG 
    ACGATCACGC GGTACGTGCT GAACGAGCAG AGCCGCAACC CGGAGGCACG 
    CGGCGACCTC ACCATCCTCC TCTCCCACAT CGTGCTTGGC TGCAAGTTCG 
    TCGCCTCCGC CGTCAACAAG GCCGGGCTCG CCAAGCTCAT CGGGCTGGCC 
    GGCGAGACCA ACGTTCAGGG AGAGGAGCAG AAGAAGCTGG ACGTGCTGTC 
    CAACGAGGTG TTCGTCAAGG CTCTCGTCAG CAGCGGCCGC ACCTGCGTTC 
    TTGTCTCCGA GGAGGACGAG GAAGCGACGT TCGTGGACCC TGCGCTGCGT 
    GGGAAGTATT GCGTGTGCTT TGATCCACTC GACGGCTCCT CCAACATCGA 
    CTGTGGCGTC TCCATCGGAA CGATCTTTGG GATCTACATG ATCAAAGATA 
    AGGAGAATGT GACTCTTGAG GACGTGTTAC AGCCTGGAAA AAACATGGTT 
    GCTGCTGGAT ACTGCATGTA CGGCAGTTCC TGCACGCTTG TTCTGAGTAC 
    TGGAAATGGT GTCAATGGCT TCACACTTGA TCCATCTCTC GGGGAGTTCA 
    TATTAACTCA TCCAGACATC AAGATACCAA AGAAAGGGAA GATTTATTCA 
    GTGAATGAAG GGAATGCGAA AAATTGGGAC GAGCCTACCG CAAAGTTTGT 
    GGAGAAGTGC AAGTTCCCTA AGGATGGTTC ATCACCTAAA TCCTTGAGAT 
    ACATTGGAAG TATGGTTGCT GATGTCCACC GTACGTTGCT ATATGGAGGA 
    GTATTTTTGT ACCCTGCAGA CAAGAAGAGC CCAAATGGAA AACTCCGTGT 
    TCTGTATGAA GTTTTCCCCA TGTCATTCCT GATGGAGCAG GCTGGAGGCC 
    AGTCTTTCAC AGGCAAAGAA CGGGCTCTTG ACCTCGTTCC TACCAAGATT 
    CACGAGAGAT CCCCAATATT TCTTGGAAGC TTCGAAGATG TGGAGGAGAT 
    CAAAGGGTTG TACGCTGCAC AGGCGAAGTA AGCTCGGTTT GATCGATCTG 
    GCACCATCAA GGCGTGCGAA TGGACTCCCT GGCCTTACTG TAACATGCAT 
    GATTCGTCAG GCACTTCTTT TATTCGTCTT ACTGTACGTT TGTAAAATTC 
    AGTGTAATAG TGTTGAGGCC TGGAACAGCT TCATGAGCAA CTAAGGCCTT 
    TTCTACTATT ATTTACAAAA TACATACACC GTGCATCTCT AGCAGCTAAA 
    GCACTAATAC AACAAGTCAC TAAGGC

    Gene models with high sequence identity

    1. AT1G43670.1 [+] show detail - Inositol monophosphatase family protein
      E-value: 6e-168; Score: 587.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Carbohydrate phosphatase 3.7e-116
    HAMAP Fructose-1,6-bisphosphatase 40.765
    HMMPanther Fructose-1,6-bisphosphatase 1.3e-219
    Gene3D no description 3.2e-71
    Gene3D no description 3.8e-53
    HMMPfam Fructose-1,6-bisphosphatase 7.8e-138
    PatternScan Fructose-1,6-bisphosphatase, active site 0
    FPrintScan Fructose-1,6-bisphosphatase 2e-72
    FPrintScan Fructose-1,6-bisphosphatase 2e-72
    FPrintScan Fructose-1,6-bisphosphatase 2e-72
    FPrintScan Fructose-1,6-bisphosphatase 2e-72
    FPrintScan Fructose-1,6-bisphosphatase 2e-72
    FPrintScan Fructose-1,6-bisphosphatase 2e-72

    See the detailed result >

    AT1G43670.1

    Model type
    Protein coding
    Short Description
    Inositol monophosphatase family protein
    Computational Description
    Inositol monophosphatase family protein; FUNCTIONS IN: fructose 1,6-bisphosphate 1-phosphatase activity, phosphoric ester hydrolase activity; INVOLVED IN: carbohydrate metabolic process, fructose metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Fructose-1,6-bisphosphatase, active site (InterPro:IPR020548), Fructose-1,6-bisphosphatase (InterPro:IPR000146); BEST Arabidopsis thaliana protein match is: high cyclic electron flow 1 (TAIR:AT3G54050.2); Has 3746 Blast hits to 3738 proteins in 1274 species: Archae - 47; Bacteria - 2330; Metazoa - 401; Fungi - 156; Plants - 330; Viruses - 0; Other Eukaryotes - 482 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR