K10026

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10026

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10026

Determination of introduced cDNA(s)

  • J023043F21 - Rice Full-length cDNAs - Original: J023043F21

    full reading [+] show sequence

    Nucleotide sequence: J023043F21 - full reading 
    GATCGTCTCT GCACTCACAC TGCACAAAGA TGTTTCCCAG TAGTGTAAAT 
    ATGCGGGAGC AAAATAATAT CATAATAATA TCAATAGCCA TGTCCATCCT 
    CCTACTCGTT GTGTTCTTCT GTCGGATGTT GGGTAACATG GCGGGCAAGA 
    ACAAGAGGAA GAAGCAACCT AAGCTACCAC CCGGGCCAGC TACTATGCCG 
    GTGTTGGGTA ACATTCACCA GATTCTGATG AACAAGCCGG TGTTCAGGTG 
    GATCCACCGC CTTCTCGACG AGATGGACAC CGAGATCCTG TGCCTCCGTC 
    TCGGCAGCGT CCATGTGATC GCCATCGCCT CACCGGAGAT GGCCCGGGAG 
    GCCCTGCGCA GGAACGATGC CGTGCTGACT TCCCGGCCGG TATCGTTCGC 
    GTGGCGGGCG TTCAGCTTTG GGTACAAGAA CACCGTTGGG TCGACGGGCG 
    ATCAGTGGAA GAAAATGAGG CGGATGCTCG CGTCGGAGAT CCTCTCATCG 
    GCCATGGAGC GGCGAATGCT TGGCCAGCGC GTCGAGGAGG CTGACCACCT 
    TGTCAATTAC ATCTACAGGA ACTGTAATAA TGGCACTGTA GACATCCGGC 
    ACGTAACGAG ACACTTCTGT GGCAACATCA TCAGGAAGCT GGTGTTTGGC 
    CGGAGACACT TCGCCTTCGG CGCTGGCAAT ATCGGCCCTG GCCGTGATGA 
    GGAGGCCCAC ATTGACGCGC TCTTCACGGC GCTAGACTAC CTCGGCGCAT 
    TCTCCATCTC CGACTACTTC CCGTCGTTGG TTCTCAATGG CCTGATGAGT 
    ACATTCAGAC GGCTGCATGA TCCAATCATA ATGGAGAGGA TGGAAGAATG 
    GAGGGCTCCC AGGAGAAATG GTGATGAGAG GAGAGAAGTT GCCGATTTTC 
    TGGATGTGTT GATCTCCTTG GACGATGCAC AGGGAAAACC GTTGTTGTCA 
    CTTGATGAGG TCAAGGCAGA AACGCTGGTA ATAAGCTCTA TTACACCGTC 
    ATATATATAT ATTTCAAACT AGGACTATAG ATATGTCCTC GGAAGAAAAA 
    TAGTACGCTT GAAGTGCTTA CATTTTGGTC CAAATTTCTA ATACTAGAAA 
    TGCTTATATT TTACAATTAA TTAGTGAGGT CTTGGTTTCG TTATAGGAAA 
    CAATATACTA TGGTGTGGTT CCGTTC

    Gene models with high sequence identity

    1. AT4G39950.1 [+] show detail - cytochrome P450, family 79, subfamily B, polypeptide 2
      E-value: 8e-62; Score: 234.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Cytochrome P450 1.6e-21
    Gene3D Cytochrome P450 5.1e-36
    superfamily Cytochrome P450 2.4e-40
    HMMPanther CYTOCHROME P450 SUBFAMILY 79 1.5e-142
    HMMPanther Cytochrome P450 1.5e-142

    See the detailed result >

    AT4G39950.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 79, subfamily B, polypeptide 2
    Curator Summary
    Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates.
    Computational Description
    "cytochrome P450, family 79, subfamily B, polypeptide 2" (CYP79B2); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: in 8 processes; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 79, subfamily B, polypeptide 3 (TAIR:AT2G22330.1); Has 28507 Blast hits to 28366 proteins in 1550 species: Archae - 44; Bacteria - 2565; Metazoa - 10705; Fungi - 5395; Plants - 8898; Viruses - 0; Other Eukaryotes - 900 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR