K10032

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10032

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Original: K10032

Determination of introduced cDNA(s)

  • J013033K23 - Rice Full-length cDNAs - Original: J013033K23

    full reading [+] show sequence

    Nucleotide sequence: J013033K23 - full reading 
    GACCTCCACA ATCACACTGA GCTAACCTCC ATTTCCACCA TCTCCGAGCT 
    TCTTGTTGTT GTTGTTGTTG GTTTGGTTTG CGAGTCTGCA ACCAATGGAC 
    GCGTCTCCGA GCTCCTCGTC GTCGTCTCCT GTGGCGCCGG AGGTGGTGCA 
    ATGGGCCGGC GGCGCCGACG GCTTTGGCTC GGCGGCGATC GGCTTCGCGT 
    GCAGGGTGCT CTGCGCCGTC GCCACCTGCG TCTTCGCCGC AGTGGGGTCG 
    GTGGTCGGGG CGGTGACCGG GAGCGCGATC GGGCTGGCGA CGGAGAGCGG 
    AATGCTGCGC GGCGCCGGCA TCGGCGCCAT CTCCGGCGCC GTCTTCTCCA 
    TCGAGGTCGC CGAGTCGTCG CGCGACCTCT GGCACTCCAG CGACTCCGCC 
    GTCTGGTGCC TCGTCTACAT GGTCGACATC ATCTCCAGCC TCCTGAGTGG 
    AAGGCTGGTG CGGGAGAAGG TGGGTCCCGC GGTTCAGAGC GCGGTTCAGA 
    GTCAGATAAG CGCCATCAGC TCGCCGTTCG CCGAGACCAG CGACCTGTTC 
    GAGACCGGCG GCACCAAGGG TTTACCGGCG GACACGCTCC GCCGGCTGCC 
    GGCGATCAAG ATCACCGGCG ACAACGCCGT CGACTCCGCC GGCGAGCACA 
    TCTGCTGCTC CGTGTGCCTC CAGGATTTCC GCGTAGGTGA GATGGCAAGA 
    AGGCTACCAA GCTGCCGGCA CGTGTTTCAC GTGCCGTGCA TCGACTGCTG 
    GCTGGTGAGG CACGGCTCCT GCCCGCTGTG CCGGCGAGAC ATCTGATCGA 
    TCGTGATCAA AATCTCGCAT CTGATGAACG ATCAGTTCAT GTCATCGTAC 
    TCCGAATCGG ACACGGCGAT GAATGGTGGA TCGAGTTCGT GGTACATAGG 
    TTGTGTGTAG TAGAGTAGAA CGAACTACTG CATCCTGATA TCCGTAAGGG 
    GAATGGGTGT GAGCAAGTGA TTGCAATCTC GTGAAGATGG AGAGAGAATG 
    AGACCTTCCA AAAAAAAATC TTTTTTACTG TCCTTGAGTA GTTACCGGAA 
    GGGAATATTG TACCGTGGTA TCTCTGTTGC GTTGAGGTAT CGGAATGTAT 
    TGTAAATTTA CAGTAAAAAT CGTTGTAACT TTAGGTATCT TTTCAAGAAT 
    ACTGGAGGC

    Gene models with high sequence identity

    1. AT4G35840.1 [+] show detail - RING/U-box superfamily protein
      E-value: 2e-53; Score: 206.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther gb def: Hypothetical protein At2g28920 5.9e-14
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 5.9e-14
    superfamily RING/U-box 7e-15
    Gene3D no description 2.7e-13
    ProfileScan Zinc finger, RING-type 11.707
    HMMSmart Zinc finger, RING-type 1.8e-05

    See the detailed result >

    AT4G35840.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: NEP-interacting protein 2 (TAIR:AT2G17730.1); Has 8964 Blast hits to 8940 proteins in 268 species: Archae - 0; Bacteria - 2; Metazoa - 2132; Fungi - 649; Plants - 5031; Viruses - 28; Other Eukaryotes - 1122 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR