K10034

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10034

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10034

Determination of introduced cDNA(s)

  • J023052C23 - Rice Full-length cDNAs - Original: J023052C23

    full reading [+] show sequence

    Nucleotide sequence: J023052C23 - full reading 
    GACCATTCCT TCAGTTCTTT GTCTATCTCA AGACACAAAT AACTGCAGTC 
    TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTGCTTC ACTTCTCTGC 
    TTGTGTTGTT CTGTTGTTCA TCAGGAAGAA CATCTGCAAA GATCTTCCAC 
    AGCAACAGCT AGACAACCAC CATGTCGGCT CTCACCACGT CCCAGCTCGC 
    CACCTCGGCC ACCGGCTTCG GCATCGCCGA CAGGTCGGCG CCGTCGTCGC 
    TGCTCCGCCA CGGGTTCCAG GGCCTCAAGC CCCGCAGCCC CGCCGGCGGC 
    GACGCGACGT CGCTCAGCGT GACGACCAGC GCGCGCGCGA CGCCCAAGCA 
    GCAGCGGTCG GTGCAGCGTG GCAGCCGGAG GTTCCCCTCC GTCGTCGTGT 
    ACGCCACCGG CGCCGGCATG AACGTCGTGT TCGTCGGCGC CGAGATGGCC 
    CCCTGGAGCA AGACCGGCGG CCTCGGTGAC GTCCTCGGTG GCCTCCCCCC 
    TGCCATGGCT GCGAATGGCC ACAGGGTCAT GGTGATCTCT CCTCGGTACG 
    ACCAGTACAA GGACGCTTGG GATACCAGCG TTGTGGCTGA GATCAAGGTT 
    GCAGACAGGT ACGAGAGGGT GAGGTTTTTC CATTGCTACA AGCGTGGAGT 
    CGACCGTGTG TTCATCGACC ATCCGTCATT CCTGGAGAAG GTTTGGGGAA 
    AGACCGGTGA GAAGATCTAC GGACCTGACA CTGGAGTTGA TTACAAAGAC 
    AACCAGATGC GTTTCAGCCT TCTTTGCCAG GCAGCACTCG AGGCTCCTAG 
    GATCCTAAAC CTCAACAACA ACCCATACTT CAAAGGAACT TATGGTGAGG 
    ATGTTGTGTT CGTCTGCAAC GACTGGCACA CTGGCCCACT GGCGAGCTAC 
    CTGAAGAACA ACTACCAGCC CAATGGCATC TACAGGAATG CAAAGGTTGC 
    TTTCTGCATC CACAACATCT CCTACCAGGG CCGTTTCGCT TTCGAGGATT 
    ACCCTGAGCT GAACCTCTCC GAGAGGTTCA GGTCATCCTT CGATTTCATC 
    GACGGGTATG ACACGCCGGT GGAGGGCAGG AAGATCAACT GGATGAAGGC 
    CGGAATCCTG GAAGCCGACA GGGTGCTCAC CGTGAGCCCG TACTACGCCG 
    AGGAGCTCAT CTCCGGCATC GCCAGGGGAT GCGAGCTCGA CAACATCATG 
    CGGCTCACCG GCATCACCGG CATCGTCAAC GGCATGGACG TCAGCGAGTG 
    GGATCCTAGC AAGGACAAGT ACATCACCGC CAAGTACGAC GCAACCACGG 
    CAATCGAGGC GAAGGCGCTG AACAAGGAGG CGTTGCAGGC GGAGGCGGGT 
    CTTCCGGTCG ACAGGAAAAT CCCACTGATC GCGTTCATCG GCAGGCTGGA 
    GGAACAGAAG GGCCCTGACG TCATGGCCGC CGCCATCCCG GAGCTCATGC 
    AGGAGGACGT CCAGATCGTT CTTCTGGGTA CTGGAAAGAA GAAGTTCGAG 
    AAGCTGCTCA AGAGCATGGA GGAGAAGTAT CCGGGCAAGG TGAGGGCCGT 
    GGTGAAGTTC AACGCGCCGC TTGCTCATCT CATCATGGCC GGAGCCGACG 
    TGCTCGCCGT CCCCAGCCGC TTCGAGCCCT GTGGACTCAT CCAGCTGCAG 
    GGGATGAGAT ACGGAACGCC CTGTGCTTGC GCGTCCACCG GTGGGCTCGT 
    GGACACGGTC ATCGAAGGCA AGACTGGTTT CCACATGGGC CGTCTCAGCG 
    TCGACTGCAA GGTGGTGGAG CCAAGCGACG TGAAGAAGGT GGCGGCCACC 
    CTGAAGCGCG CCATCAAGGT CGTCGGCACG CCGGCGTACG AGGAGATGGT 
    CAGGAACTGC ATGAACCAGG ACCTCTCCTG GAAGGGGCCT GCGAAGAACT 
    GGGAGAATGT GCTCCTGGGC CTGGGCGTCG CCGGCAGCGC GCCGGGGATC 
    GAAGGCGACG AGATCGCGCC GCTCGCCAAG GAGAACGTGG CTGCTCCTTG 
    AAGAGCCTGA GATCTACATA TGGAGTGATT AATTAATATA GCAGTATATG 
    GATGAGAGAC GAATGAACCA GTGGTTTGTT TGTTGTAGTG AATTTGTAGC 
    TATAGCCAAT TATATAGGCT AATAAGTTTG ATGTTGTACT CTTCTGGGTG 
    TGCTTAAGTA TCTTATCGGA CCCTG

    Gene models with high sequence identity

    1. AT1G32900.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
      E-value: 0; Score: 741.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther STARCH SYNTHASE 9.8e-212
    HMMPanther GLYCOSYLTRANSFERASE 9.8e-212
    HMMTigr Glycogen/starch synthases, ADP-glucose type 2.2e-195
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 4.4e-102
    HMMPfam Starch synthase, catalytic domain 7.2e-71
    HMMPfam Glycosyl transferase, group 1 1.2e-17
    HAMAP Glycogen/starch synthases, ADP-glucose type 33.433

    See the detailed result >

    AT1G32900.1

    Model type
    Protein coding
    Short Description
    UDP-Glycosyltransferase superfamily protein
    Computational Description
    UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: protein binding, transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process, glucan biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycogen/starch synthases, ADP-glucose type (InterPro:IPR011835), Starch synthase, catalytic domain (InterPro:IPR013534), Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: starch synthase 2 (TAIR:AT3G01180.1); Has 13950 Blast hits to 13932 proteins in 3602 species: Archae - 351; Bacteria - 6813; Metazoa - 7; Fungi - 173; Plants - 5477; Viruses - 0; Other Eukaryotes - 1129 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR