K10046

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10046

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10046

Determination of introduced cDNA(s)

  • J013051N02 - Rice Full-length cDNAs - Original: J013051N02

    full reading [+] show sequence

    Nucleotide sequence: J013051N02 - full reading 
    GAGTAGCAGT AGCAGCGGAG GGAGCGGCAC ACGATACGCG CCGCGCGGAT 
    CCCCTCCCTT CCCTCCTCTT CTTCCTCCGC CTTCGCCGCC GCCGCCGCCG 
    CCGCCGATTA CTCGCTTCCG CCTCCGCCTC AACCCCGTTC GTCCCCAACC 
    AACCAACCGC AGTCCAATCC AAGCGAATAC TAAGCTCACT TGAATTCGGT 
    TGGTGCCTCG TCGTCATTCT GCCACCACTT GAGAGTTCCT TCATACACAC 
    ACCACTCGCA GTCTCAGCAG CAGCAGCAGC AGCGCAGTCC GTAGCAAAGC 
    TGCTGTTATC TTCCTACATG CGGATGCAGC CCAGCTAGCT AAGCTAGGTT 
    AGCTGCTGCT GTTGGTCTTG GAGGCAAACT AGTGTAATAT GTGCCGTACC 
    GCCTGCCTTT CTTCATCAAC CAAACCCCTG CCACCACTCA ACCCGGCCAA 
    CCTCTTCGAG TCAGGCTGAT GATGGGAACC GCTCATCACA ACCAAACCGC 
    CGGCTCTGCC CTCGGAGTCG GAGTCGGAGA TGCCAACGAC GCCGTGCCTG 
    GGGCTGGGGG TGGGGGCTAC AGCGACCCGG ATGGCGGACC AATCTCCGGT 
    GTGCAGCGGC CACCGCAGGT CTGCTGGGAG CGCTTCATCC AGAAGAAGAC 
    TATCAAAGTC TTGCTAGTTG ATAGCGATGA CTCCACCAGG CAGGTGGTCA 
    GTGCCCTGCT TCGTCACTGC ATGTATGAAG TCATCCCTGC TGAAAATGGC 
    CAGCAAGCAT GGACATATCT AGAAGATATG CAAAACAGCA TTGATCTTGT 
    TTTGACAGAG GTTGTTATGC CTGGTGTATC TGGAATTTCT CTATTGAGTA 
    GGATCATGAA CCACAATATT TGCAAGAATA TTCCAGTGAT TATGATGTCT 
    TCAAATGATG CTATGGGTAC AGTTTTTAAG TGTTTGTCAA AGGGCGCTGT 
    TGACTTCTTA GTCAAGCCCA TACGTAAGAA TGAACTTAAG AACCTATGGC 
    AGCATGTGTG GAGACGGTGC CACAGCTCCA GTGGCAGTGG AAGTGAAAGT 
    GGCATTCAGA CACAAAAGTG TGCCAAATCA AAAAGTGGGG ATGAATCCAA 
    TAATAACAAT GGCAGCAATG ACGATGATGA CGACGATGGT GTAATCATGG 
    GACTTAATGC AAGAGATGGC AGTGATAACG GCAGTGGCAC TCAAGCGCAG 
    AGCTCATGGA CAAAGCGCGC TGTTGAGATT GACAGTCCAC AGGCTATGTC 
    TCCAGATCAA TTAGCTGATC CACCTGATAG CACTTGTGCA CAAGTGATCC 
    ACCTGAAGTC AGATATATGC AGCAATAGAT GGTTACCATG TACAAGCAAC 
    AAAAATTCCA AGAAACAAAA AGAAACTAAT GATGACTTCA AGGGGAAGGA 
    CTTGGAAATA GGTTCTCCTA GAAATTTAAA CACAGCTTAT CAATCCTCTC 
    CGAATGAGAG ATCCATCAAA CCAACAGATA GACGGAATGA ATATCCACTG 
    CAAAACAATT CAAAGGAGGC AGCGATGGAA AATCTGGAGG AGTCAAGTGT 
    TCGAGCTGCT GACTTAATTG GTTCGATGGC CAAAAACATG GATGCACAAC 
    AGGCAGCAAG AGCCGCAAAT GCCCCTAATT GCTCCTCCAA AGTGCCAGAA 
    GGGAAAGATA AGAACCGTGA TAATATTATG CCATCACTTG AATTAAGTTT 
    GAAAAGGTCA AGATCGACTG GGGATGGTGC AAACGCAATC CAAGAGGAAC 
    AACGGAATGT TTTGAGACGA TCAGATCTCT CGGCATTTAC GAGGTACCAT 
    ACACCTGTGG CTTCCAATCA AGGTGGGACA GGATTCATGG GAAGCTGTTC 
    GCTGCATGAT AATAGCTCAG AGGCTATGAA AACGGATTCT GCTTACAACA 
    TGAAGTCAAA CTCAGATGCT GCACCAATAA AACAAGGTTC TAATGGTAGT 
    AGCAATAACA ATGACATGGG TTCCACTACA AAGAACGTTG TGACAAAGCC 
    TAGTACAAAT AAGGAGAGAG TAATGTCACC CTCAGCTGTT AAGGCTAATG 
    GACACACATC AGCATTTCAT CCTGCACAGC ACTGGACGTC TCCAGCTAAT 
    ACAACAGGAA AAGAAAAGAC TGATGAAGTG GCTAACAATG CAGCAAAGAG 
    GGCTCAGCCT GGTGAAGTAC AGAGCAACCT CGTACAACAC CCTCGCCCAA 
    TACTTCATTA TGTTCATTTC GATGTGTCAC GTGAGAATGG TGGATCCGGG 
    GCCCCTCAAT GTGGTTCATC CAATGTATTT GATCCTCCTG TCGAAGGTCA 
    TGCTGCCAAC TATGGTGTCA ATGGAAGCAA CTCAGGCAGT AACAATGGAA 
    GCAATGGGCA GAATGGGAGT ACGACTGCTG TAGATGCTGA ACGGCCAAAT 
    ATGGAGATCG CTAATGGCAC CATCAACAAA AGTGGACCTG GAGGTGGCAA 
    TGGAAGTGGA AGCGGCAGTG GCAATGACAT GTATCTGAAA CGCTTCACTC 
    AACGAGAGCA TAGAGTGGCT GCAGTGATCA AGTTTAGACA GAAAAGGAAA 
    GAGCGCAACT TCGGAAAAAA GGTGCGGTAC CAGAGCAGAA AGAGGCTGGC 
    CGAGCAGCGG CCAAGGGTCC GCGGACAGTT CGTGCGGCAA GCTGTGCAAG 
    ACCAACAACA GCAGGGTGGT GGGCGCGAAG CGGCAGCGGA CAGATGACCT 
    ACCTACCTAC CTACGCGATG GCTTTGGACT CCAAACAGCT AATTAACAGT 
    TAGTAGACAA CAGATAATGA TTCTTCTTCC TTGGCCGATC GATCAACAAC 
    ATCCCATGCA TCCGGCATCC CACCACCATT GATTCCATCA TATTTAGAGT 
    CTGGAATAAA TAAGGAACTC CTATCCTATT TATCCCCTAT CTATATATGA 
    AGATATGATA ATGGTGATCT GCGTTACTAC TAGTAGAAGA ATATGGTGTG 
    GCTGACTCCA CTTCAGGTGG ACCTATAATA CTACTCCAGT AGTATGTGCC 
    TGTGGAGTCA AGCTCGAACG TACTACTCCA TATTTAAGCA TGTCATGTAC 
    TGCTACTATG AGACGAGAGT GCTCTGCCCT GTAGGGACAG CACTATTGTC 
    AATGTCATGT GTTTGTTGGG TCACTGGTCT TCTTAGATTT GCGTCCATGT 
    CTGGCAGCAG CACTCCACTG TAGTTGGCTC ACGCATGTTG TTGAAATGAG 
    CCACATGCCT TGCCTTGAGA TAGAACTTGC TGTCACTGTT TCTCCTTAAT 
    CTAAATATAC TGGAGTGGAG TATTTTATTA TCTATGATCT GTAATCAGGT 
    GATTGACAAG GC

    Gene models with high sequence identity

    1. AT5G02810.1 [+] show detail - pseudo-response regulator 7
      E-value: 1e-99; Score: 362.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 1.8e-27
    HMMPanther SENSORY TRANSDUCTION HISTIDINE KINASE (DHKB) 4.2e-18
    HMMPanther SENSOR HISTIDINE KINASE-RELATED 4.2e-18
    HMMPfam Signal transduction response regulator, receiver domain 4.6e-22
    HMMPfam CCT domain 6.8e-17
    superfamily CheY-like 4.9e-32
    HMMSmart Signal transduction response regulator, receiver domain 2.8e-27
    ProfileScan Signal transduction response regulator, receiver domain 29.932
    ProfileScan CCT domain 15.487

    See the detailed result >

    AT5G02810.1

    Model type
    Protein coding
    Short Description
    pseudo-response regulator 7
    Curator Summary
    PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. Acts as transcriptional repressor of CCA1 and LHY.
    Computational Description
    pseudo-response regulator 7 (PRR7); CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789), CCT domain (InterPro:IPR010402); BEST Arabidopsis thaliana protein match is: pseudo-response regulator 3 (TAIR:AT5G60100.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR