K10047

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10047

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10047

Determination of introduced cDNA(s)

  • J023078H22 - Rice Full-length cDNAs - Original: J023078H22

    full reading [+] show sequence

    Nucleotide sequence: J023078H22 - full reading 
    GGCCGTCGCC GCCGCCTCCG CCGCGTGCGA AGCTTGGAGA GTTCGAGCAC 
    GGGCATGGCG TCCTCGGGGG GAGCGGCGAT CTCGGCGGGG CCCACGCCGC 
    CGTCGGCGGC GGCGGCGTCG TCGTCGGTGG ACTGGCACCT GCGGCCGCCG 
    AACCCGAAGA ACCCGGTGGT GTTCTTCGAC GTGACCATCG GGTCCATCCC 
    CGCCGGCCGC ATCAAGATGG AGCTCTTCGC CGACATCGTC CCCAAGACGG 
    CGGAGAACTT CCGGCAGTTC TGCACTGGAG AGCACAGGAA ATCAGGTTTA 
    CCACAGGGAT ATAAGGGTTG TCAGTTCCAT CGAGTGATCA AAGATTTCAT 
    GATTCAGGGA GGTGACTATA TGAAGGGGGA TGGTACTGGA TGCACGTCAA 
    TCTATGGTAC CAAATTTGAT GATGAAAACT TCATTGCAAA GCATACTGGT 
    CCTGGCCTAC TTTCTATGGC AAATAGTGGG GTGAACTCTA ATGGATCTCA 
    GTTCTTTATA ACTTGTGCAA AATGTGAATG GCTGGACAAC AAGCATGTGG 
    TTTTTGGGAG GGTGCTAGGG GATGGTATGC TTGCTGTGCG GAAGATCGAG 
    AATGTTGCAA CTGGACCAAA CAACCGACCG AAGCTCGCAT GTGTCATAAG 
    CGAGTGTGGT GAGATGTAGT TTGTACCTTG AGGGTGACTA TTCTTGGTGC 
    TGCTGATGTA GAAATAGACT TTGCATGGAT GAAACTACTC CAGCATTGGA 
    AGCACCATAA GACATAGCTG TACCAAAGTA TCAATTCACC TTGAATGAGT 
    GTCTGTCTAT ACACTGATGA AAGTTCATCC TCACTTCGTC AGTGACATCA 
    GTTGTCACTT AAACTGTTGA TTAATATTCT AAACAGGGAA TATGTGTGTC 
    TGTTCGACTT GAACCTTCGT CATGTCAAGT GGAGCTGGCA TTATATTCAG 
    CTGAACATGC TTGATGAAAT GATGAGTCGA TCTGTGGTTG CACCCATTTT 
    ATAAAGTATA CTAAACTATA AGCTGCC

    Gene models with high sequence identity

    1. AT2G38730.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 6e-90; Score: 327.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 2.5e-45
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 42.097
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 5.1e-61
    HMMPanther PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H, PPIH 2e-120
    HMMPanther CYCLOPHILIN 2e-120
    superfamily Cyclophilin-like 3.8e-68
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 8e-32
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 8e-32
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 8e-32
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 8e-32
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 8e-32

    See the detailed result >

    AT2G38730.1

    Model type
    Protein coding
    Short Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 14613 Blast hits to 14579 proteins in 2550 species: Archae - 106; Bacteria - 5772; Metazoa - 2906; Fungi - 1375; Plants - 1228; Viruses - 4; Other Eukaryotes - 3222 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR