K10103

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10103

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1 rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10103

Determination of introduced cDNA(s)

  • J023130P09 - Rice Full-length cDNAs - Original: J023130P09

    full reading [+] show sequence

    Nucleotide sequence: J023130P09 - full reading 
    TTGGAGAGAG AGAGACAGAC AGAGTGCGGC GCCGAGGAGG AGAGGAGCAA 
    TAATCCAATT CCAATCCATT CCTCCGCGAC CTCGTCGTCC GATCATGGCC 
    ATGGCCGCCT CCAGGTTGCT GTGGGCTTCC CGCGCCGCCT CCTACCTCAA 
    GATCTCCACT TTCCCCAGGG CCTTCTCCAC CGTGCTGAAG GATCTGAAGT 
    ATGCTGACAC TCATGAATGG GTTAAGGTTG AGGGTGATTC GGCAACCGTT 
    GGAATTACAG ACCATGCCCA GCACCATTTG GGTGATGTTG TGTATGTGGA 
    GCTTCCAGAA GTTGGCAGCA GTGTATCCCA GGGAAAGAAC TTTGGTGCTG 
    TTGAAAGTGT GAAGGCAACC AGCGATATCT ACTCTCCAGT ATCTGGAGAG 
    GTGGTTGCAG TGAACGATGG ACTAGGCGAT GAACCTGGAT TGGTTAATAC 
    AAGTCCATAC GAGAGTGGGT GGATCATCAA GGTCAAGGTT AGTGATTCAG 
    GTGAGCTCAA TTCATTGATG GATGACGCGA AATACTCGAA ATTCTGCGAG 
    GAAGAAGATA GCAAGCATTG AACAAATACC AGTGACTTGT GATCTGCAAA 
    GAATGCGCCT TGACCCTTTT GTCAATGCTT GTGATGTGCT ATCGAGCACT 
    TATCTTTACC ACCGGCTGCT CCTGAAATCA GCACCGATCA ACACATGAAT 
    AAATTAGTGT TGGCATTGCC TCTTCCACAA AGAGTTGCAA ACTTCGAACC 
    TGTAAATGAC ATGAGTTTCG TTATTTCTTT GTAGTATCGC GTGATTTCAT 
    CTTCAATTGT AGCTCTGCCG CCTCTGCTCC GTTTATTTCT GAAACGTGTG 
    CTTCGTTTAC TTC

    Gene models with high sequence identity

    1. AT2G35120.1 [+] show detail - Single hybrid motif superfamily protein
      E-value: 5e-57; Score: 218.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Glycine cleavage H-protein 1e-67
    HMMPfam Glycine cleavage H-protein 2.9e-49
    HAMAP Glycine cleavage H-protein 29.651
    superfamily Single hybrid motif 2.2e-48
    PatternScan 2-oxo acid dehydrogenase, lipoyl-binding site 0
    HMMTigr Glycine cleavage H-protein, subgroup 1.2e-66
    Gene3D no description 3.3e-48

    See the detailed result >

    AT2G35120.1

    Model type
    Protein coding
    Short Description
    Single hybrid motif superfamily protein
    Computational Description
    Single hybrid motif superfamily protein; FUNCTIONS IN: glycine dehydrogenase (decarboxylating) activity, ATP binding; INVOLVED IN: glycine catabolic process, glycine decarboxylation via glycine cleavage system; LOCATED IN: mitochondrion, glycine cleavage complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 2-oxo acid dehydrogenase, lipoyl-binding site (InterPro:IPR003016), Single hybrid motif (InterPro:IPR011053), Glycine cleavage H-protein (InterPro:IPR002930), Glycine cleavage H-protein, subgroup (InterPro:IPR017453); BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT1G32470.1); Has 7147 Blast hits to 7147 proteins in 2201 species: Archae - 168; Bacteria - 4552; Metazoa - 187; Fungi - 130; Plants - 205; Viruses - 0; Other Eukaryotes - 1905 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR