K10105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10105

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10105

Determination of introduced cDNA(s)

  • J023052O21 - Rice Full-length cDNAs - Original: J023052O21

    full reading [+] show sequence

    Nucleotide sequence: J023052O21 - full reading
    GTCCCTCTCC CTCCGCTCGT CCCTGCACAC AGAATCCTCC TCCTCTTCCT 
    CCGCGGCGGC GCCGCCGCCG CCGAGTTCTC CATTGATCCG GCGATGGCCG
    GCAAATCCAA TCCCGTCTCC AACAATCAGG AATAATTAAG ACCCTGTCGT
    TGTCGGGTCT GATCGATTTG GAGAGGAGAT GGACGCCGGT GTGGGTCTCC
    GGGCGAAGCC CGGCGCCTGG GCCGGACTCG GAAACCCACG CCGCTCTTCC
    ACGGCGAGGG TTCCGGTGAG GTTCGCGGTG GAGAAGTTCG CTCAGCCGTT
    GGTTTTGGGC TCCGATCGCC GGAGCTGCGG TGCCAAACTG AAGGTTTCGT
    GTTCCAGGAA ACCGGCAGGT ATTGACAAAA CCTATTACTC TGCTGATGAA
    GCTCTTGTTC TAAAGCAAAA AGCAGAGGAC GTGGTCCCTT ATTTGAATGA
    CCGGTGTATT TACTTAGTTG GAATGATGGG TTCTGGCAAA ACTACAGTTG
    GGAAGATATT AGCTGAAGTA TTAGGCTATT CTTTCTTTGA CAGCGATAAG
    TTGGTTGAGA AGGCAGTTGG CATATCATCT GTTGCTGAAA TCTTTCAGCT
    CCATAGTGAA GCATTCTTCA GAGATAATGA GGAGTTACAT GAAGAAAGGG
    TCAACAATCT GGTTAGATGT TCCATTGGAT GCACTTGCAA GACGAATTGC
    TGCAGTAGGA ACTGCTTCTC GGCCCCTCTT GCATCAAGAA TCTGGTGATC
    CTTATGCAAA GGCTTATGCA AAACTGACTG CACTTTTTGA ACAAAGAATG
    GACTCATATG CTAATGCTGA TGCCAGGGTT TCACTCGAAC ATATTGCAGT
    GAAACAAGGA CATAGTAATG TGACGACACT TACACCAAGT GCCATTGCTA
    TTGAGGCATT GCTAAAGATG GAGAGCTTTC TTACTGAGAA GGCAATGATC
    AGAAACTAAC CACTTTTGGG TGGTTAAAAG CACATCAACA AACAAAATCT
    CTTGTTTGTT CTGTTGTATT TATCGCATAT ACCTAAGGCG TGTTTCTTAG
    TATAGCATGA ACTTGTTAGT CACCCCTATG AAGGAGGGTG ATTTGAGTTT
    GAACTTGTGT AAATGGATAA GTAATAGCTT TCAATTGAAA GAAAAGTTTG
    TGTTGTGTTT TGTGCCG

    Gene models with high sequence identity

    1. AT2G21940.5 [+] show detail - shikimate kinase 1
      E-value: 4e-55; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Shikimate kinase 4.6e-17
    HMMPfam Shikimate kinase 0.000000012
    Gene3D no description 2.7e-17
    FPrintScan Shikimate kinase 0.00000000021
    FPrintScan Shikimate kinase 0.00000000021
    HMMPanther SHIKIMATE KINASE 1.8e-39
    HMMPanther SHIKIMATE KINASE 3.5e-22
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-16

    See the detailed result >

    AT2G21940.5

    Model type
    Protein coding
    Short Description
    shikimate kinase 1
    Computational Description
    shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7831 Blast hits to 7831 proteins in 2412 species: Archae - 26; Bacteria - 5482; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR