K10105

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10105

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10105

Determination of introduced cDNA(s)

  • J023052O21 - Rice Full-length cDNAs - Original: J023052O21

    full reading [+] show sequence

    Nucleotide sequence: J023052O21 - full reading 
    GTCCCTCTCC CTCCGCTCGT CCCTGCACAC AGAATCCTCC TCCTCTTCCT 
    CCGCGGCGGC GCCGCCGCCG CCGAGTTCTC CATTGATCCG GCGATGGCCG 
    GCAAATCCAA TCCCGTCTCC AACAATCAGG AATAATTAAG ACCCTGTCGT 
    TGTCGGGTCT GATCGATTTG GAGAGGAGAT GGACGCCGGT GTGGGTCTCC 
    GGGCGAAGCC CGGCGCCTGG GCCGGACTCG GAAACCCACG CCGCTCTTCC 
    ACGGCGAGGG TTCCGGTGAG GTTCGCGGTG GAGAAGTTCG CTCAGCCGTT 
    GGTTTTGGGC TCCGATCGCC GGAGCTGCGG TGCCAAACTG AAGGTTTCGT 
    GTTCCAGGAA ACCGGCAGGT ATTGACAAAA CCTATTACTC TGCTGATGAA 
    GCTCTTGTTC TAAAGCAAAA AGCAGAGGAC GTGGTCCCTT ATTTGAATGA 
    CCGGTGTATT TACTTAGTTG GAATGATGGG TTCTGGCAAA ACTACAGTTG 
    GGAAGATATT AGCTGAAGTA TTAGGCTATT CTTTCTTTGA CAGCGATAAG 
    TTGGTTGAGA AGGCAGTTGG CATATCATCT GTTGCTGAAA TCTTTCAGCT 
    CCATAGTGAA GCATTCTTCA GAGATAATGA GGAGTTACAT GAAGAAAGGG 
    TCAACAATCT GGTTAGATGT TCCATTGGAT GCACTTGCAA GACGAATTGC 
    TGCAGTAGGA ACTGCTTCTC GGCCCCTCTT GCATCAAGAA TCTGGTGATC 
    CTTATGCAAA GGCTTATGCA AAACTGACTG CACTTTTTGA ACAAAGAATG 
    GACTCATATG CTAATGCTGA TGCCAGGGTT TCACTCGAAC ATATTGCAGT 
    GAAACAAGGA CATAGTAATG TGACGACACT TACACCAAGT GCCATTGCTA 
    TTGAGGCATT GCTAAAGATG GAGAGCTTTC TTACTGAGAA GGCAATGATC 
    AGAAACTAAC CACTTTTGGG TGGTTAAAAG CACATCAACA AACAAAATCT 
    CTTGTTTGTT CTGTTGTATT TATCGCATAT ACCTAAGGCG TGTTTCTTAG 
    TATAGCATGA ACTTGTTAGT CACCCCTATG AAGGAGGGTG ATTTGAGTTT 
    GAACTTGTGT AAATGGATAA GTAATAGCTT TCAATTGAAA GAAAAGTTTG 
    TGTTGTGTTT TGTGCCG

    Gene models with high sequence identity

    1. AT2G21940.5 [+] show detail - shikimate kinase 1
      E-value: 4e-55; Score: 107.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Shikimate kinase 4.6e-17
    HMMPfam Shikimate kinase 0.000000012
    Gene3D no description 2.7e-17
    FPrintScan Shikimate kinase 0.00000000021
    FPrintScan Shikimate kinase 0.00000000021
    HMMPanther SHIKIMATE KINASE 1.8e-39
    HMMPanther SHIKIMATE KINASE 3.5e-22
    superfamily P-loop containing nucleoside triphosphate hyd 1.5e-16

    See the detailed result >

    AT2G21940.5

    Model type
    Protein coding
    Short Description
    shikimate kinase 1
    Computational Description
    shikimate kinase 1 (SK1); FUNCTIONS IN: shikimate kinase activity, ATP binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 2 (TAIR:AT4G39540.2); Has 7831 Blast hits to 7831 proteins in 2412 species: Archae - 26; Bacteria - 5482; Metazoa - 44; Fungi - 134; Plants - 162; Viruses - 0; Other Eukaryotes - 1983 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR