K10113

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10113

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10113

Determination of introduced cDNA(s)

  • J033130G24 - Rice Full-length cDNAs - Original: J033130G24

    full reading [+] show sequence

    Nucleotide sequence: J033130G24 - full reading 
    GCCCTTCTCC AAATCCCCTT CGCATTCGAT CCCCTCCCCT CGCCGCCGTC 
    TCCTCCACCT CCGCCGCTCG CCGCCCGATC CCCTCCCATC CCCTCCGCCC 
    CGCCGCCCCG CACCTAGATA TGCCGTCGTC GTCGTCGGCG GCGGCGGCGG 
    CGTGCGGGCC CCCGGAGTTC ACGCCGGGGT GGAAGACGGT GTCGACGTGC 
    GCCCCGGACG TCGTCGGCGA GGGCGTCCAC GTGTTCGACA TCTTCGGGTA 
    CAGCGACCAC AAGGGGATGG GCGCCCACGA GCCCATCAGG TCGGGGGCCT 
    TCTCCGTCGC CGGCCTCGAC TGGGTCGCCT GCCTCTACGC CGACGGCTAC 
    GGCGTCGCCG GCATCGACGA CGTCTCCGCC TACCTCAGGC TCCTCGGCGA 
    CGCGCCCACC CCGCGCGTGT GGGTCTCCTG CGAGGTCAAG CTCGTCGACC 
    AGCGCACCGG GGTGGCCTCC ACGCCGCAGC CCTTCCTCAG GTACGCCCTG 
    GCGTTCGGCG ACAAGTGCAA GGCCCTCCAC TGTATGATGA TCCCCAGGGG 
    CCAGATCGAG GTGGAGCCCT ACCTCGTGGA TGATCGCCTC ACCATGGAGT 
    TCCATGTCGT CGTCAGGAGA GACCCCCGGG TGTCGAGGAC CGCCCGGTTC 
    CCGCGCATCT TGGTGCCGCC GCCCGACATC AAGCGGCAGT TTGCCAACCT 
    GCTGCAGAGC AAGGAGGGCG CAGATGTCAC CTTCGATGTC GCGGGGGAGC 
    CGTTCTCCGT GCACAAGCTC GTGCTCGCGA TGCGGTCGCC AGTGTTCAAG 
    GCGGAGCTCT GCGGGCTGCT GAGGGAGCCG GGAACACAGC CTATTACCAT 
    CGTTGATATG CAGCCCGCCG TCTTCAGGGC CCTGCTGCAA TTCATCTATA 
    CCGATCAGTT CCCCGTGACG CGCGGTTTCG AGAGACGCGA CAATTGTGAA 
    ATGATCCGGC ACCTGCTCGT TGCTGCGGAC AGATACGCCG TGGATAGGCT 
    AAAGCTGCTA TGCCAAGGTA TCCTTTGCAA GAATCTTAAT GTTCACAATG 
    TCGCGACTAC GCTGGCACTG GCTGATCAGC ATCAATGCGA CAAGCTGAAG 
    GATGCTTGCA TCGAATTTAT GTCATGTTCA AAGAAGATGA AGGGTGTAGT 
    GGCGAGCAAA GGGTATGAGG ATCTCCAAAG AATGGCACCT TCTGTCTTGG 
    CGGATGCCGT GGCGCAGATG TCGAAGCTCA ACAAAATGTC AAGGGGTAGT 
    GTTCCACAAG ATGAGTCTAA GAGCTGTTAG CTTAATTTAT AAGGGATATG 
    GGTATTCTTT CTTCTCTTCC TAAATCAGGT ACCGTAGTCA GTTTACTCTT 
    TACATTTTGG GAGCACCTTT GTGGTGCTTA TCTGTTTATA TGATAGATAG 
    GTTTATTTTA TCTCTTTGCA AGCTTTGTTT CCATTAACTG ACATATAACC 
    TGTTGTCCTT CCGC

    Gene models with high sequence identity

    1. AT5G19000.1 [+] show detail - BTB-POZ and MATH domain 1
      E-value: 5e-51; Score: 199.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan BTB/POZ-like 17.479
    ProfileScan MATH 9.575
    ProfileScan PROKAR_LIPOPROTEIN 5
    Gene3D BTB/POZ fold 4.5e-23
    HMMPfam BTB/POZ 3.6e-23
    HMMPanther BTB-RELATED 2.1e-63
    HMMPanther Kelch related 2.1e-63
    HMMSmart BTB/POZ-like 4.7e-23
    superfamily BTB/POZ fold 2.1e-28
    superfamily TRAF-like 0.0000000000083

    See the detailed result >

    AT5G19000.1

    Model type
    Protein coding
    Short Description
    BTB-POZ and MATH domain 1
    Computational Description
    BTB-POZ and MATH domain 1 (BPM1); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 2 (TAIR:AT3G06190.1); Has 5705 Blast hits to 5596 proteins in 158 species: Archae - 0; Bacteria - 0; Metazoa - 3900; Fungi - 59; Plants - 1504; Viruses - 0; Other Eukaryotes - 242 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR