K10114

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K10114

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K10114

Determination of introduced cDNA(s)

  • J013033I15 - Rice Full-length cDNAs - Original: J013033I15

    full reading [+] show sequence

    Nucleotide sequence: J013033I15 - full reading 
    GTAGCGGCAG CATGCTCATC CGGTCGCCTC CGCGCCCTTG GAGGAGGAGG 
    CTCCCCCAGC ACGTTGTAAT AGTTGATGCG AGCTCATCGT CTCGTGGCCC 
    GAAGGCAGCG ACGGGTGGCC GGCTCGAGAC GTCGACTGAC GCTGCAGCGG 
    TGGCCGGGGA GGATGGAGAC GTGATCCGGA GGCTGCAGAA CGGACCGGAC 
    GTGCGTGGCG TTGCGCTGGA AGGGGAGAAC GGCCGGGCCG TGGACCTCAC 
    GCCGCTGGCG GTCGAGGTGA TCGCCGAGAG CTTCGGGGAG TGGCTGCGGG 
    AGGAGCTCCA GCAGCTGGAG AGCGGGAGGG ACGGCGGCGA GGTGCGGGTG 
    TCCGTCGGAA GGGACCCCCG CCTGTCTGGC GCGCGGCTCG GCGCAGCACT 
    GTTCGCGGGG CTGGCGAGGG CAGGGTGTTC CGTGTTCGAC GTGGGGCTCG 
    CCACCACGCC GGCTTGCTTC ATGAGCACCA AGCTCCCACG GTTCAGCTAT 
    GACGCCTCCA TCATGATGAC TGCATCACAT CTCCCATACA CTCGCAACGG 
    CCTCAAGTTC TTCATGAAGC GCGGTGGTCT CACGTCCGGC GAGGTGGAAG 
    GGGTCTGCGA CCGTGCGGCG CGGAAGTACG TGGCCAGGAA GATGGGCCTT 
    GGCGGCGGGC GAGGCATGCC GCCGGTGGTG ATGCGCGTCG ACTTGATGAG 
    CGCCTATGCG CAGCACCTCC GCAACATAAT CAAGGAGCGT GTTGCCCACC 
    CGACACACTA CGACACCCCC CTAAAGGGCT TCAAGGTGAT CGTGAATGCC 
    GGCAACGGCT GCGGAGGGTT CTTCACGTGG GACGTCCTGG AGAAGCTGGG 
    AGCCGACACG ACGGGGAGCC TCCACCTGGA GCCCGACGGC AAGTTCCCTC 
    ACCACATGCC CAACCCGGAG GACACGACCG CGATGTCCCT CACGCGCGAT 
    GCGGTCCTGG ACCACGGCGC GGACCTCGGC GTGGTGTTCG ACACCGACGT 
    GGACCGCAGC GGCGTGGTGG ACGCCACGGG CGCGGCCATC AACGGCGATC 
    GGCTCATCGC GCTCATGTCC GCCATCGTGC TGGACGAGCA CCCCGGCACG 
    ACGGTGGTCA CGGACGCGCG GACCAGCGAC GGGCTCACCC GCTTCATCCA 
    GGCCAGGGGC GGCCACCACT GCCTCTACCG CGTCGGCTAC CGAAACGTCA 
    TTGACAAGGG CGTGCAGCTC AACGCCGACG GCGTCGAGAC GCACCTCATG 
    ATGGAGACCA CCGGCCACGG CGCGCTCAAG GAGAACAACT TTCTCGACGA 
    CGGTACGCCT AGCTACGTCC ATATCCACAC ATACATACGT CATCTGCTTG 
    GAGTCTTAAT AGCATATATA ACGTCGAATT TAACAAGATT TACAAATGTT 
    GATCTCTTGT ACTACATCCT ATATATATGC TAATTACTTA TCCGC

    Gene models with high sequence identity

    1. AT1G70820.1 [+] show detail - phosphoglucomutase, putative / glucose phosphomutase, putative
      E-value: 1e-146; Score: 516.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PHOSPHOGLUCOMUTASE 6e-156
    HMMPanther PHOSPHOHEXOMUTASE FAMILY MEMBER 6e-156
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.4e-27
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 1.5e-27
    superfamily Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 7.3e-15
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 4.6e-15
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 4.6e-15
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 4.6e-15
    FPrintScan Alpha-D-phosphohexomutase, N-terminal 4.6e-15
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.3e-23
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 3.6e-19
    Gene3D Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III 2.8e-18
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain I 2.1e-29
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain II 3.1e-21
    HMMPfam Alpha-D-phosphohexomutase, alpha/beta/alpha domain III 1.3e-08

    See the detailed result >

    AT1G70820.1

    Model type
    Protein coding
    Short Description
    phosphoglucomutase, putative / glucose phosphomutase, putative
    Computational Description
    phosphoglucomutase, putative / glucose phosphomutase, putative; FUNCTIONS IN: intramolecular transferase activity, phosphotransferases; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Alpha-D-phosphohexomutase, alpha/beta/alpha domain III (InterPro:IPR005846), Alpha-D-phosphohexomutase, alpha/beta/alpha domain II (InterPro:IPR005845), Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III (InterPro:IPR016055), Alpha-D-phosphohexomutase (InterPro:IPR005841), Alpha-D-phosphohexomutase, alpha/beta/alpha domain I (InterPro:IPR005844); BEST Arabidopsis thaliana protein match is: phosphoglucosamine mutase family protein (TAIR:AT5G17530.2); Has 16953 Blast hits to 16952 proteins in 2734 species: Archae - 435; Bacteria - 11347; Metazoa - 78; Fungi - 46; Plants - 64; Viruses - 0; Other Eukaryotes - 4983 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR